Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi127g00045 ATGATTCAATCTGCGTCTGCTGCACCATCGCAACTTCAATTGGAAGCTAATGCTATACTCAGCAGTCGATGGTGGGATTCTGACTTCAATATCTCAGATCGCTGTGAGTGGTATGGTATAGCTTGCAACAAAGCAGGAAGCATAACAGAAATCAACTATGGCTGTAATAAAGTAGGGGTTCAATTGGCAGCACTCAACCTCTCTGCTTTCCAGAATTTAGAAAAGCTTATCGTCACTAAATGTGGATTACGAGGGACTATCCCACCAGAAACAGGTACTCTCACCAAACTCACTTATCTCGATTTGTCCAGCAATTCTCTTGAAGGTGAGATACCCCCTTCAATAGGAAATCTTAGCCTATTACAGAGCCTAGACTTTTCTAACAACGACATTCAAGGCTCCATTCCTCATGAGTTGGGTTTCCTCAAAAATCTTACTTTATTAAGTCTACCTCATAATAGAATCAATGGGATCTTGCCTATTTCACTTACAAATCTCACCCGATTAGAAAAGCTTGGCATTTCCAACAATCTTCTTGTTGGTTCTCTCCCTTCTAACTTAGATGAATTAACCAACTTGCATGTCTTGCGGCTAAATAACAACTTCATCAATGGAACCTTGCCTATTTCACTTACACGTCTCACACATTTAGAAGAACTTGACATTTCCAACAATCTTCTAGTCGGTTCCCTCCCTTTTAACATAGTTAAATTAACCAACTTACATGAGTTGCGGCTAAATAACAACTCCATCACTGGGAATATAATACCCTTGTTATTTAAAAGCCTATCCATTATCGACCTAAGTCACAACCTTATTAGTGGTGAAATAGAACCACTTATTCGACTTCCACTAGAGTTAAACTATGTGGATCTAAGCTACAATAAACTCACTGGAACAGTTCCCCGATTTCTCTTTAGTGTCGATTATGTGAACATTTCCTACAACTATTTGAAGGGTCCCATACCATATAGCGTCAGTCCTGATGCTTTGATAGGCAACAAGGATATGTGTAGTGACATTTTGTCTAACCAAATGCAATTCCAATTCCAGCCTTGTTCACCTCGCAACAAGACAAGTAACAAAGTAATGCGTAATTTAGCCATCGTTCTTCCTATCCTCATTTTTCTAATCCTAGCCTTCTCACTACTTGTGTGTTTGAAGCTTCGTCGCAAAGCAATTAACAACAAAACAATGACTAAGAATGGAGATATATTCTCTATATGGAACTATGATGGAAACATAGCATATGAAGACATCATCAGAGTAACAGAAGGCTTTGACATCAAGTATTGCATTGGAATGGGAGCATACGGAAGTGTTTACAAGGCACAATTACCTCATGGCAAGGTTGTTGCCTTGAAGAAACTCCATGGTTTTGAAGCAGAGGTGCCAACTTTGGATGAGAGTTTTAGGAACGAAGTTAGAGTATTATCAGAAATAAAGCATCGACATATTGTGAAACTTCATGGATTTTGCTTGCACAATAGAATCATGTTTTTGATCTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATAATGATACAGAAGCAATGGAATTAGATTGGAGAAAAAGGGTTAACATTGTTAAAGGCATTGCACATGCTTTGTCATATCTTCATCATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACGAGTAATATCTTACTTAACTCAGAGTGGGAGCCAAGTCTTTCTGACTTTGGCACAGCCAGACTTCTCCAACATGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGATATATAGCTCCGGAGCTTGCCTACACAATGGTTGTGAGTGAAAAGTGTGATGTCTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGGAAGCATCCTAAGGAAATATTGTCATCACTCGAATCAACATCAACTCATGACATAGCACTACGTGAAGTATTGGACCAACGCCTCCCACTGCCAAATATCAACTCATGA 1986 0.3933 MIQSASAAPSQLQLEANAILSSRWWDSDFNISDRCEWYGIACNKAGSITEINYGCNKVGVQLAALNLSAFQNLEKLIVTKCGLRGTIPPETGTLTKLTYLDLSSNSLEGEIPPSIGNLSLLQSLDFSNNDIQGSIPHELGFLKNLTLLSLPHNRINGILPISLTNLTRLEKLGISNNLLVGSLPSNLDELTNLHVLRLNNNFINGTLPISLTRLTHLEELDISNNLLVGSLPFNIVKLTNLHELRLNNNSITGNIIPLLFKSLSIIDLSHNLISGEIEPLIRLPLELNYVDLSYNKLTGTVPRFLFSVDYVNISYNYLKGPIPYSVSPDALIGNKDMCSDILSNQMQFQFQPCSPRNKTSNKVMRNLAIVLPILIFLILAFSLLVCLKLRRKAINNKTMTKNGDIFSIWNYDGNIAYEDIIRVTEGFDIKYCIGMGAYGSVYKAQLPHGKVVALKKLHGFEAEVPTLDESFRNEVRVLSEIKHRHIVKLHGFCLHNRIMFLIYQYMEKGSLFSVLYNDTEAMELDWRKRVNIVKGIAHALSYLHHDCNPPIVHRDIATSNILLNSEWEPSLSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGKHPKEILSSLESTSTHDIALREVLDQRLPLPNINS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi127g00045 661 ProSitePatterns Tyrosine protein kinases specific active-site signature. 551 563 IPR008266 GO:0004672|GO:0006468
Sebi127g00045 661 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 390 505 - -
Sebi127g00045 661 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 161 255 - -
Sebi127g00045 661 FunFam Os07g0541700 protein 506 593 - -
Sebi127g00045 661 SUPERFAMILY L domain-like 24 324 - -
Sebi127g00045 661 ProSitePatterns Protein kinases ATP-binding region signature. 433 455 IPR017441 GO:0005524
Sebi127g00045 661 ProSiteProfiles Protein kinase domain profile. 427 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00045 661 SMART LRR_typ_2 238 262 IPR003591 -
Sebi127g00045 661 SMART LRR_typ_2 214 235 IPR003591 -
Sebi127g00045 661 SMART LRR_typ_2 166 190 IPR003591 -
Sebi127g00045 661 SMART LRR_typ_2 94 118 IPR003591 -
Sebi127g00045 661 SMART LRR_typ_2 142 165 IPR003591 -
Sebi127g00045 661 Pfam Leucine rich repeat 72 131 IPR001611 GO:0005515
Sebi127g00045 661 FunFam Nuclear pore complex protein NUP107 6 160 - -
Sebi127g00045 661 Pfam Protein kinase domain 431 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00045 661 Gene3D Ribonuclease Inhibitor 9 136 IPR032675 -
Sebi127g00045 661 SMART LRR_sd22_2 260 282 - -
Sebi127g00045 661 SMART LRR_sd22_2 214 243 - -
Sebi127g00045 661 SMART LRR_sd22_2 94 120 - -
Sebi127g00045 661 SMART LRR_sd22_2 166 189 - -
Sebi127g00045 661 SMART LRR_sd22_2 142 163 - -
Sebi127g00045 661 Gene3D Ribonuclease Inhibitor 137 345 IPR032675 -
Sebi127g00045 661 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 123 656 - -
Sebi127g00045 661 PRINTS Leucine-rich repeat signature 97 110 - -
Sebi127g00045 661 PRINTS Leucine-rich repeat signature 214 227 - -
Sebi127g00045 661 ProSiteProfiles Leucine-rich repeat profile. 262 284 IPR001611 GO:0005515
Sebi127g00045 661 Gene3D Transferase(Phosphotransferase) domain 1 506 660 - -
Sebi127g00045 661 SMART tyrkin_6 427 654 IPR020635 GO:0004713|GO:0006468
Sebi127g00045 661 Gene3D Phosphorylase Kinase; domain 1 389 505 - -
Sebi127g00045 661 SUPERFAMILY Protein kinase-like (PK-like) 405 637 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi127g00045 Sebi-Chr127 1403216 1405588 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi127g00045 73 599 Receptor kinase-like Gene Family AT4G08850 39.194 3.03e-120 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi127g00045 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi127g00045 - - aprc:113862530 762.681