Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi127g00043 ATGGGGAGTAGTCAATCTGCACCATCACAGCTTCAATTGGATTTGGAAGCTAATGCTTTACTCAACAGTCGATGGTGGAACACGTCCGATCCATACTACAATGTTTCCCGTCGCTGCGAGTGGGAACATACAATAGTTTGCAACAAGGCTGGAAGCATAACAGAAATCCATTATGGGGAATATTATTATCATCCAGTCAGGCTTCAATTTGCAACACTCAATCTCTCTACTTTCAAGAATTTAGAAAAGCTTGTTGTCAATGTTAGTGGACTACAAGGGACCATTCCATCAGAAATAGGTACTCTCACCAAACTCATTCATCTCGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGTCTATTACAGAGCCTTCACATCTCTTTCAACAACATTCAAGGCTCCATTCCTCATGAGTTGGGCTTCCTAAAAAGTCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGGGAGATACCCCCTTCAATAGGAAATCTTAGCCTATTACAAAGCCTTGGCATCTCTCAAAACAACATTCAAGGTTCCATTCCTCATGAGTTGAGCTTCCTCAAAAATCTTACTTCATTAGATTTGTCCTACAACTCTCTTGAAGGGGAGATACTCCCTTCAATAGGAAATCTTAGCCTATTACAAAACCTTGACATCTCTCAAAACAACATTCAAGGTTCCATTCCTCATGAGTTGAGCTTCCTAAAAAATCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATAGGAAATATTAGCCTATTACAGAGCATATACATCTCTAACAACAACATTCAAGGCTCCATTCCTCATGAGTTGAGCTTCCTAAAAAATCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATAGGAAATATTAGCCTATTACAGAGCATATACATCTCTAACAACAACATTCAAGGCTCCATTTCTCATGAGTTGGGCTTCCTCAAAAATCTTATTTCATTAAATTTGTCTAACAACCACATTCAAGACTCAATTCCTCATGAGTTGGGCTTCCTCAAAAATCTTACTTCATTAGATCTGTCTCACAACAGAATCAGTGGGACCCTGCCTATTTCACTTGCAAGTCTTACCCACTTAGAAGAGCTTGACATTTCCAACAATTTTCTTGTTGGTTCCCTCCCTTCTAACTTAGATCAATTATCCAACTTGCAAGAGTTATGGCTAGGTAACAACTCAATCAATGGGACCTTGCCTATTTCACTTACAAGTCTCACCAGATTAGAAAAGCTTGACATTTCCCACAATCAACTAGTTGGTCCCCTCCCTAATTTAGTTCAACTAATCAACTTGCAAGAGTTGCGACTAAATGAAAACTCCATCAGTGGGAACATATTAATACCCTCGTCAATTCAAAGCCTTATCAATATCAACCTCAGTCACAACGTTTTCACCGGTGAAATACCACAACTACTTTATCTCCCATTGTTAAACAATTTGGATCTAAGCTACAATAATCTTTCTGGAATGATTCCCCAATATCTCCTGCAAGTCAATTATGTGAACATTTCTTACAATTATCTAAAAGGTCCCATCCCAAACGGTATCAATCCTTATGCTCTAATAGGCAACAAGGAAGTATGCAGCGACATTTTGTATCTCCAATTCCAACCTTGTTCATCTCATATCAAGAAAAGTAACAAAGTAGTGCACAAGACAAGTGACAAAGTAGTGCACAGTCTAGTCATAGTTCTTCCTATCCTCATTTTTCTAATCTTGACCTTCGCACTACTTGTGTGTCTAAAGCTTCGTCTTGTTGCAACCAAGAAAAAACATGAAAAGACGGTGACAGCTAAGAATGGGGATTTGTTCTGCATTTGGGACTATGATGGAAATATAGCATATGAAGACATCATCAGAGCAACTGAGGACTTTGACATGAAATACTGCATTGGAACAGGAGCATATGGCAGTGTTTACAAGGCACAATTACCTGGTGGTAAGGTTGTTGCCTTGAAGAAACTCCACAGATTTGAAGCAGAGGTGGTGACTTTTGATAAGAGTTTTAGAAATGAAGTGAGGGTATTATCAGAAATAAAGCATCGACATATTGTGAAACTTTATGGATTCTGCTTGCATAAAAGAATCATGTTTTTAATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATACAGAAGCAATGGAATTGGATTGGATAAAGAGGGTTGACATTGTTAAAGGCATTACACATGCTCTGTCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACCAATATCTTGCTTAACTCTGAGTGGCAGCCTAGTGTTGCGGACTTTGGCACAGCCAGACTCCTCAAACATGATTCATCTAATCAAACTATAGCCGCTGGAACCATTGGGTATATAGCTCCAGAGCTTGCCTATACAATGGTTGTGAGTGAAAAGTGTGATGTCTACAGCTTCGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGGCATCCTAAGGAAATATTGTCATCAATTCAATCACCATCTGCTCAAGGCATCAAATTATGGGAAATATTAGACCAACGCCTTCCACTACCAAATATGTCAGTTTCATTTGACATAGTTCGGGTTGCCATAGTAGCATTTGCATGTTTAAATCTCAATCCTTGCTCTCGACCGACAATGAAATATGTGTCTCATTGTTTTCATACTCCGATAACATCATCAAGCATTCCTTCACTTGAAATTTCATTGCAACAGCTCATGAGTCAAGAACTCAAGTTTTATTTAGATTTGTAA 2865 0.3853 MGSSQSAPSQLQLDLEANALLNSRWWNTSDPYYNVSRRCEWEHTIVCNKAGSITEIHYGEYYYHPVRLQFATLNLSTFKNLEKLVVNVSGLQGTIPSEIGTLTKLIHLDLSYNSLEGEIPPSMGNLSLLQSLHISFNNIQGSIPHELGFLKSLTSLDLSYNSLEGEIPPSIGNLSLLQSLGISQNNIQGSIPHELSFLKNLTSLDLSYNSLEGEILPSIGNLSLLQNLDISQNNIQGSIPHELSFLKNLTSLDLSYNSLEGEIPPSIGNISLLQSIYISNNNIQGSIPHELSFLKNLTSLDLSYNSLEGEIPPSIGNISLLQSIYISNNNIQGSISHELGFLKNLISLNLSNNHIQDSIPHELGFLKNLTSLDLSHNRISGTLPISLASLTHLEELDISNNFLVGSLPSNLDQLSNLQELWLGNNSINGTLPISLTSLTRLEKLDISHNQLVGPLPNLVQLINLQELRLNENSISGNILIPSSIQSLININLSHNVFTGEIPQLLYLPLLNNLDLSYNNLSGMIPQYLLQVNYVNISYNYLKGPIPNGINPYALIGNKEVCSDILYLQFQPCSSHIKKSNKVVHKTSDKVVHSLVIVLPILIFLILTFALLVCLKLRLVATKKKHEKTVTAKNGDLFCIWDYDGNIAYEDIIRATEDFDMKYCIGTGAYGSVYKAQLPGGKVVALKKLHRFEAEVVTFDKSFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDTEAMELDWIKRVDIVKGITHALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLLKHDSSNQTIAAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILSSIQSPSAQGIKLWEILDQRLPLPNMSVSFDIVRVAIVAFACLNLNPCSRPTMKYVSHCFHTPITSSSIPSLEISLQQLMSQELKFYLDL 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi127g00043 954 FunFam MDIS1-interacting receptor like kinase 2 737 930 - -
Sebi127g00043 954 Gene3D Transferase(Phosphotransferase) domain 1 737 932 - -
Sebi127g00043 954 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Sebi127g00043 954 Pfam Leucine rich repeat 321 379 IPR001611 GO:0005515
Sebi127g00043 954 Pfam Leucine rich repeat 392 451 IPR001611 GO:0005515
Sebi127g00043 954 SMART tyrkin_6 658 924 IPR020635 GO:0004713|GO:0006468
Sebi127g00043 954 ProSiteProfiles Leucine-rich repeat profile. 368 391 IPR001611 GO:0005515
Sebi127g00043 954 SUPERFAMILY L domain-like 264 551 - -
Sebi127g00043 954 SMART LRR_typ_2 198 222 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 414 437 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 150 174 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 438 461 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 294 318 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 102 126 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 507 531 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 390 413 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 246 270 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 366 389 IPR003591 -
Sebi127g00043 954 SMART LRR_typ_2 342 364 IPR003591 -
Sebi127g00043 954 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515
Sebi127g00043 954 Pfam Leucine Rich Repeat 248 269 IPR001611 GO:0005515
Sebi127g00043 954 Pfam Leucine Rich Repeat 296 317 IPR001611 GO:0005515
Sebi127g00043 954 SMART LRR_sd22_2 246 272 - -
Sebi127g00043 954 SMART LRR_sd22_2 438 466 - -
Sebi127g00043 954 SMART LRR_sd22_2 390 413 - -
Sebi127g00043 954 SMART LRR_sd22_2 414 437 - -
Sebi127g00043 954 SMART LRR_sd22_2 198 224 - -
Sebi127g00043 954 SMART LRR_sd22_2 366 387 - -
Sebi127g00043 954 SMART LRR_sd22_2 294 320 - -
Sebi127g00043 954 SMART LRR_sd22_2 150 176 - -
Sebi127g00043 954 SMART LRR_sd22_2 102 128 - -
Sebi127g00043 954 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 358 925 - -
Sebi127g00043 954 Gene3D Ribonuclease Inhibitor 360 458 IPR032675 -
Sebi127g00043 954 Pfam Protein kinase domain 663 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00043 954 ProSiteProfiles Protein kinase domain profile. 658 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00043 954 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524
Sebi127g00043 954 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 71 293 - -
Sebi127g00043 954 PRINTS Leucine-rich repeat signature 438 451 - -
Sebi127g00043 954 PRINTS Leucine-rich repeat signature 369 382 - -
Sebi127g00043 954 SUPERFAMILY L domain-like 15 329 - -
Sebi127g00043 954 ProSitePatterns Tyrosine protein kinases specific active-site signature. 782 794 IPR008266 GO:0004672|GO:0006468
Sebi127g00043 954 Gene3D Phosphorylase Kinase; domain 1 618 736 - -
Sebi127g00043 954 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 294 575 - -
Sebi127g00043 954 Gene3D Ribonuclease Inhibitor 166 261 IPR032675 -
Sebi127g00043 954 Gene3D Ribonuclease Inhibitor 9 165 IPR032675 -
Sebi127g00043 954 Gene3D Ribonuclease Inhibitor 459 570 IPR032675 -
Sebi127g00043 954 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 620 736 - -
Sebi127g00043 954 SUPERFAMILY Protein kinase-like (PK-like) 644 921 IPR011009 -
Sebi127g00043 954 Gene3D Ribonuclease Inhibitor 262 359 IPR032675 -
Sebi127g00043 954 ProSiteProfiles Leucine-rich repeat profile. 344 367 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi127g00043 Sebi-Chr127 1265782 1268889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi127g00043 16 830 Receptor kinase-like Gene Family AT4G08850 36.383 1.42e-167 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi127g00043 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi127g00043 - - ccaj:109796569 994.186