Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi127g00027 ATGCCTCAAAAACCACGCCGCCAACTTAGGTGGCCACGCCTTAGACGGTTGCGGCGAGTTCATGCCGTCCCCCACCGCCACCGCCGCCGACCCAAGTTCCATAAATGCGCCGCCTGTGGCTGCCACCGGAATTTCCACCGCCGTGAGCCAGAAGAGCCACCAATCACCACCGCCACACATGTAATAGAGTACCAACCTCACCACCGCCACCACCCTCCTCCTCCGCCGTTTCAGCCGTCGAACCGGAGCCCCAATTCAGCTTCTCCGCCGCCGATCTCCTCGTCTTACTACCCGTCCGCCCCTCACATGCTGCTGGCTCTCTCCGCCGGACTGGCGGCGCCGCCGGAAAACACGGCTGGCCCCACCATTATTCACAACAACAACAGCGCGATGGTGTCCCCTGGGTCCCACACGAGGAAACGGTTCAGGACAAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCAAAGGTTCGCAGAGAAAGTTGGGTGGAAGATGCAGAAGAGGGATGAGGATTTGGTGCAAGAGTTTTGCAACGAGATTGGTGTTGATAGAGATGACCCCATCAACCATAACAACAACAATGCTGATATCAATGGCAACGATGGTGCTGAGGATCCAAGTCATAATCACTACCACCAGAATGAAGCAACTGTTCGTGCTAATGGGTCATCTTCTTCTTCTTGA 684 0.5614 MPQKPRRQLRWPRLRRLRRVHAVPHRHRRRPKFHKCAACGCHRNFHRREPEEPPITTATHVIEYQPHHRHHPPPPPFQPSNRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPENTAGPTIIHNNNSAMVSPGSHTRKRFRTKFSQEQKEKMQRFAEKVGWKMQKRDEDLVQEFCNEIGVDRDDPINHNNNNADINGNDGAEDPSHNHYHQNEATVRANGSSSSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi127g00027 227 SUPERFAMILY Homeodomain-like 126 184 IPR009057 -
Sebi127g00027 227 Pfam ZF-HD protein dimerisation region 31 50 IPR006456 -
Sebi127g00027 227 MobiDBLite consensus disorder prediction 71 86 - -
Sebi127g00027 227 MobiDBLite consensus disorder prediction 118 138 - -
Sebi127g00027 227 MobiDBLite consensus disorder prediction 66 95 - -
Sebi127g00027 227 MobiDBLite consensus disorder prediction 120 135 - -
Sebi127g00027 227 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 193 - -
Sebi127g00027 227 MobiDBLite consensus disorder prediction 184 227 - -
Sebi127g00027 227 MobiDBLite consensus disorder prediction 213 227 - -
Sebi127g00027 227 NCBIfam homeobox domain, ZF-HD class 139 185 IPR006455 -
Sebi127g00027 227 Gene3D - 125 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi127g00027 Sebi-Chr127 556627 557460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi127g00027 31 199 ZF-HD Transcription Factor Family AT1G69600 42.222 1.43e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sebi127g00027 ZF-HD_dimer 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi127g00027 - - qsa:O6P43_004486 189.119