Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi127g00014 ATGAATAATAATATCACTATCATTCATAATACCATGGCCTTCCCACAACCTCAAAGTTTCATGTTTAACACCAATGAAGATCATCATGACCACCTCCCTTCAACCTCTCTCAATACCTTCCCCTCTTTCCCACCCCAACACTTTCAAGGGGGTGTACCTTTTTTGTTGAAGCGGTCCATGTCATTTTCAGGCATAGAGAACAAGTGTGATGAAGTGCATGGAGATGATGAGTTATCTGATGATGGATTCCAAAGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAGGGCCCTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAATTGGCTAAGGCTCTGGGGTTGCAGCCAAGACAGATTGCTATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAACTGGAGAAGGAATATGAAGTCCTCAAAAAGCAATTTGAAGCTGTCAAGACTGACAACAATGTCCTTAAGGCTCAGAACCAGAAACTACATGCAGAGTTACAAGCTCTAAAAAGTAGGGATTGGTGTGAAGCTGGAACAATCAGCCTTAAGAAAGAAACTGAGGGTTCTTGGAGCAATAATGGAAGTGATAACAGCTCAGACATCAATTTAGATCTCTCAAGAACACCAGTTTTAAACAGTCCTGTATCTTCTCAGAACTGTAAAAGCCTTCTACCCACTTCATTAAAACCCACCAGCATAACACAGCTCCTTCAATACTCATCAAGACCAGATCTTCAAGATGAAGGCTTCTGCAACATGCTTCACAACATTGATCAGCAGCAGAACTTTTGGCCCTGGCCTGAGCAGCACCATTTCCATTGA 855 0.4292 MNNNITIIHNTMAFPQPQSFMFNTNEDHHDHLPSTSLNTFPSFPPQHFQGGVPFLLKRSMSFSGIENKCDEVHGDDELSDDGFQSGEKKKRLNLEQVRALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKTDNNVLKAQNQKLHAELQALKSRDWCEAGTISLKKETEGSWSNNGSDNSSDINLDLSRTPVLNSPVSSQNCKSLLPTSLKPTSITQLLQYSSRPDLQDEGFCNMLHNIDQQQNFWPWPEQHHFH 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi127g00014 284 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Sebi127g00014 284 CDD homeodomain 88 144 IPR001356 GO:0003677
Sebi127g00014 284 Gene3D - 81 152 - -
Sebi127g00014 284 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Sebi127g00014 284 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Sebi127g00014 284 FunFam Homeobox-leucine zipper protein ATHB-13 80 147 - -
Sebi127g00014 284 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Sebi127g00014 284 SMART HOX_1 86 147 IPR001356 GO:0003677
Sebi127g00014 284 SUPERFAMILY Homeodomain-like 79 145 IPR009057 -
Sebi127g00014 284 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Sebi127g00014 284 Pfam Homeobox associated leucine zipper 143 182 IPR003106 GO:0006355|GO:0043565
Sebi127g00014 284 Coils Coil 135 183 - -
Sebi127g00014 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 256 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi127g00014 Sebi-Chr127 178196 180098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi127g00014 12 279 Homeobox Transcription Factor Family AT5G15150 51.007 5.50e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi127g00014 Homeodomain 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi127g00014 K09338 - gmx:100797920 407.912