Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi127g00013 ATGGGGAGTAGTCAATCTGCACCATCACAGCTTCAATTGGATTTGGAAGCTAAAGCCATACTCAACAGTCGATGGTGGAACACGTCCGATCCATACTACAATGTCTCCCTTCGCTGTGATCAGTGGTACGGTATAGCTTGCAACAAGGCAGGAAGCATAACAGAAATCAACTACTATTCTGAAGCAGCGGTTCAATTTGCAACACTCAACCTCTCTGCTTTCCAGAATTTAGAAAAGCTTATTGTCACTGAATGTGGATTACGAGGGACTATGCCACCAGAAATAGGTACTCTCACCAAACTCACTTATCTCGATTTGTCAAGCAATTCTCTTCAAGATTTGTCAAGCAATTCTCTTGAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGCCTATTACAGCGTCTATACATCTCTAACAATAACATTCAAGGCTCCATTCCTCATGAGTTGGGTTTCCTTAAAAATCTTACTACATTATATTTGTCTCATAACAGAATCAGTGGGACCTTGCCCATTTCACTTACAAATCTCACCCAGTTACAAGAGCTTGACATTTCCAACAATCTTGTTGGTTGCCTCCCTTCTAACTTAGATCAATTATCCAACTTGCAGTTCTTGTGGCTAGATAACAACTCCATCAATGGGACTATCCCACCAGAAATTGGTACTCTCACAAAACTCACTTATCTCGATTTGTCCAGCAATTATCTTGAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGCCTATTACAGAGCCTTCACATCTCTAACAACCACATTCAAGGCTCCATTCCTCATGAGTTAGACTTCCTCAAAAATCTTAATACATTAGATTTGTCAAGCAATTATTTTAAAGGTGAGATACCTCCTTCAATGGAAAATCTAAGCCTATTACAGAGCCTATACATCTCTAACAACAACATTCAAGGCTCCATTCCTCATGAGTTGGGCTTCCTCAAAAATCTTACTTCATTAGATCTGTCTCATAACAGAATCAGTGGGACCTTGCCCATTTCAATTACAAATCTCACCCAGTTAGAAAAGCTTGACGTTTCCAACAATTTTCTTGTTGGTTCCCTCCCTTCTAATTTAGATCAATTAATCAACTTGCAAGAATTGCGGCTGAATGAAAACTTCATCGGTGGGAACATAATAATACCCTTGTCAATTGAAAGCCTTGTCAATATCAACCTCAGTCACAACATTTTCACCGGTGAAATACCGCAACTACTTTATGTCCCAATGTTAAACAATTTGGATTTGGATATAAGCTACAATAAACTTTCTGGAATGATTCCCCGATATCTCCTGAACATCGGTTATGTGGACATGTCTTACAATAATCTGAAAGGTCCCATCCCATATGGTATCAGTCCTCATGCTCTAATAGGCAACAAGGAAATATGCAGCAACATTTCGTATTTCCAAATCCAATTCCAATTCCAACCTTGTTCATCTCACAGCAACACAAGTAACAAAGTAGTGCACAATCTAGTCATAGTTCTTCCTGTCCTCATTTTTCTAATCTTGTCCTTCACAATACTTGTGTGTCTAAAGTCTCGTCTTGTTGCCACCAAGAAAATACATGAAAACACAGTGACAGCTAAAAATGGGGATTTGTTCTGCATTTGGAACTATGATGGAAATATAGCATATGAAGACATCATTAGAGCAACTGAGGACTTTGACTTGAAATACTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCTGGTGGCAAGGTTGTTGCCTTGAAGAAACTCCACAGATTTGAAGCAGAGGTGGAAAGTTTTGATAAGAGTTTTAGAAATGAAGTGAGGGTATTATCAGAAATAAAGCATCGGCATATTGTGAAGCTTTATGGATTTTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTGCCTTGTATGATGATACAGAAGCATTGGAATTGGATTGGAGAAAGAGGGTTGACATTGTTAAAGGCATTGCACATGCTCTGTCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACCAATATCTTACTTAACTCTGAGTGGCAGCCTAGTGTTGCAGACTTTGGTACAGCCAGACTCGTCAAACATGATTCATCCAATCAAACTATAGTCGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCTTATACTATGGTTGTAAGTGAAAAGTGTGATGTTTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGGCATCCAAAGGAAATATTAATGTCATCGGTTCAATCCTCAACATCTGCTAATGGAAATTTCATTGCTACAACTCATGAGTCAAGAACTCAAACATTATGTAAAACTTTGAACTCTCTCGCGAAAGCGAAACTTCAGATTGTACGTAGTTGA 2442 0.3898 MGSSQSAPSQLQLDLEAKAILNSRWWNTSDPYYNVSLRCDQWYGIACNKAGSITEINYYSEAAVQFATLNLSAFQNLEKLIVTECGLRGTMPPEIGTLTKLTYLDLSSNSLQDLSSNSLEGEIPPSMGNLSLLQRLYISNNNIQGSIPHELGFLKNLTTLYLSHNRISGTLPISLTNLTQLQELDISNNLVGCLPSNLDQLSNLQFLWLDNNSINGTIPPEIGTLTKLTYLDLSSNYLEGEIPPSMGNLSLLQSLHISNNHIQGSIPHELDFLKNLNTLDLSSNYFKGEIPPSMENLSLLQSLYISNNNIQGSIPHELGFLKNLTSLDLSHNRISGTLPISITNLTQLEKLDVSNNFLVGSLPSNLDQLINLQELRLNENFIGGNIIIPLSIESLVNINLSHNIFTGEIPQLLYVPMLNNLDLDISYNKLSGMIPRYLLNIGYVDMSYNNLKGPIPYGISPHALIGNKEICSNISYFQIQFQFQPCSSHSNTSNKVVHNLVIVLPVLIFLILSFTILVCLKSRLVATKKIHENTVTAKNGDLFCIWNYDGNIAYEDIIRATEDFDLKYCIGTGAYGSVYKAQLPGGKVVALKKLHRFEAEVESFDKSFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSALYDDTEALELDWRKRVDIVKGIAHALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLVKHDSSNQTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILMSSVQSSTSANGNFIATTHESRTQTLCKTLNSLAKAKLQIVRS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi127g00013 813 FunFam Os07g0541700 protein 643 730 - -
Sebi127g00013 813 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515
Sebi127g00013 813 Pfam Leucine Rich Repeat 100 120 IPR001611 GO:0005515
Sebi127g00013 813 PANTHER LEUCINE RICH REPEAT KINASE 2 300 777 - -
Sebi127g00013 813 ProSiteProfiles Protein kinase domain profile. 564 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00013 813 FunFam Leucine-rich repeat receptor protein kinase EMS1 111 194 - -
Sebi127g00013 813 SUPERFAMILY RNI-like 194 525 - -
Sebi127g00013 813 Gene3D Ribonuclease Inhibitor 394 457 IPR032675 -
Sebi127g00013 813 Gene3D Ribonuclease Inhibitor 9 112 IPR032675 -
Sebi127g00013 813 Gene3D Ribonuclease Inhibitor 113 191 IPR032675 -
Sebi127g00013 813 Gene3D Ribonuclease Inhibitor 291 390 IPR032675 -
Sebi127g00013 813 ProSitePatterns Tyrosine protein kinases specific active-site signature. 688 700 IPR008266 GO:0004672|GO:0006468
Sebi127g00013 813 FunFam Leucine-rich repeat receptor protein kinase EMS1 195 275 - -
Sebi127g00013 813 Gene3D Ribonuclease Inhibitor 192 290 IPR032675 -
Sebi127g00013 813 Pfam Leucine rich repeat 275 334 IPR001611 GO:0005515
Sebi127g00013 813 Pfam Leucine rich repeat 156 214 IPR001611 GO:0005515
Sebi127g00013 813 Gene3D Transferase(Phosphotransferase) domain 1 643 809 - -
Sebi127g00013 813 PRINTS Leucine-rich repeat signature 101 114 - -
Sebi127g00013 813 PRINTS Leucine-rich repeat signature 321 334 - -
Sebi127g00013 813 Pfam Protein kinase domain 569 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00013 813 ProSiteProfiles Leucine-rich repeat profile. 100 121 IPR001611 GO:0005515
Sebi127g00013 813 Gene3D Phosphorylase Kinase; domain 1 524 642 - -
Sebi127g00013 813 SMART LRR_bac_2 98 117 - -
Sebi127g00013 813 SMART LRR_bac_2 345 365 - -
Sebi127g00013 813 SMART LRR_bac_2 178 197 - -
Sebi127g00013 813 SMART LRR_typ_2 273 297 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 201 223 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 321 344 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 225 249 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 130 152 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 345 369 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 98 121 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 178 200 IPR003591 -
Sebi127g00013 813 SMART LRR_typ_2 154 177 IPR003591 -
Sebi127g00013 813 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 276 482 - -
Sebi127g00013 813 SUPERFAMILY L domain-like 10 291 - -
Sebi127g00013 813 FunFam Leucine-rich repeat receptor protein kinase MSP1 522 642 - -
Sebi127g00013 813 SMART LRR_sd22_2 201 216 - -
Sebi127g00013 813 SMART LRR_sd22_2 98 116 - -
Sebi127g00013 813 SMART LRR_sd22_2 321 344 - -
Sebi127g00013 813 SMART LRR_sd22_2 154 177 - -
Sebi127g00013 813 SMART LRR_sd22_2 345 368 - -
Sebi127g00013 813 SMART LRR_sd22_2 273 299 - -
Sebi127g00013 813 SMART LRR_sd22_2 178 200 - -
Sebi127g00013 813 SMART LRR_sd22_2 225 251 - -
Sebi127g00013 813 ProSitePatterns Protein kinases ATP-binding region signature. 570 592 IPR017441 GO:0005524
Sebi127g00013 813 ProSiteProfiles Leucine-rich repeat profile. 323 346 IPR001611 GO:0005515
Sebi127g00013 813 SMART tyrkin_6 564 800 IPR020635 GO:0004713|GO:0006468
Sebi127g00013 813 ProSiteProfiles Leucine-rich repeat profile. 156 179 IPR001611 GO:0005515
Sebi127g00013 813 SUPERFAMILY Protein kinase-like (PK-like) 550 769 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi127g00013 Sebi-Chr127 164633 167647 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi127g00013 72 736 Receptor kinase-like Gene Family AT4G08850 38.133 4.96e-150 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi127g00013 Pkinase 8.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi127g00013 - - gmx:102666098 823.928