Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi127g00008 ATGTATCGACATTTCCTTCGTCTTGTTGCAACCAAGAAAAAACATGAAAACACAGTGACAACTAAGAATGGGGATTTGTTCTGCATATGGAACTATGATGGAAATATAGCATATGAAGACATCATTAGAGCAACTGAGGACTTTGACATGAAATACTGCATTGGAACGGGAGCATATGGGAGTGTTTACAAGGCACTATTACCTGGTGAAGCAATGGAATTGGATTGGAAAAAGAGGGTTGACATTGTCAAAGGCATTGCACATGCTCTATCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGATATAGCTACCACCAATATCTTGCTTAACTCTGAGTGGCAGCCTAGTGTTGCAGACTTTGGCACATCCAGACTCCTCAAACATGATTCATCTAATCAAACTATAGTTGCTGGAACCATTGGATATATAGCTCCGGAGCTTGCCTACACAATGGTTGTGAGTGAAAAGTGTGATGTTTATAGCTTCGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGACATCCTAAGGAAATATTGTCATCAATTCAATCACCATTTGCTCAAGGCATCAAATTATGGGAAATATTAGACCAACGCCTTCCACTACCAAATATGTCAGTTTCACTTGGCATAGTTCGAGTTGCCGTAGTAGCATTTGCATGTTTAAATCCCAATCCTTGCTCTCGACCGACAATGAAATATGTATCTCAATGTTTTCATACTCAGATAACACCATTAAGCATTCCTTCACTTGAAATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAAGTTTTATTTAGATTTGTAA 822 0.3893 MYRHFLRLVATKKKHENTVTTKNGDLFCIWNYDGNIAYEDIIRATEDFDMKYCIGTGAYGSVYKALLPGEAMELDWKKRVDIVKGIAHALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTSRLLKHDSSNQTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILSSIQSPFAQGIKLWEILDQRLPLPNMSVSLGIVRVAVVAFACLNPNPCSRPTMKYVSQCFHTQITPLSIPSLEISLQQLMSQELKFYLDL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi127g00008 273 SMART tyrkin_6 48 243 IPR020635 GO:0004713|GO:0006468
Sebi127g00008 273 PANTHER LEUCINE RICH REPEAT KINASE 2 12 70 - -
Sebi127g00008 273 Gene3D Transferase(Phosphotransferase) domain 1 59 249 - -
Sebi127g00008 273 Pfam Protein kinase domain 77 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00008 273 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi127g00008 273 ProSitePatterns Tyrosine protein kinases specific active-site signature. 101 113 IPR008266 GO:0004672|GO:0006468
Sebi127g00008 273 SUPERFAMILY Protein kinase-like (PK-like) 37 256 IPR011009 -
Sebi127g00008 273 FunFam Leucine-rich repeat receptor-like protein kinase 58 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi127g00008 Sebi-Chr127 80809 82215 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi127g00008 60 255 Receptor kinase-like Gene Family AT5G49660 39.806 5.33e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi127g00008 Pkinase 4.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi127g00008 - - aprc:113862530 327.791