Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi126g00058 ATGCAGAAAATTCCAGATGCTTTCATCTGTAGAATGGAGGGCAGGTCGTACGGAATAGTTTTATTAACTGGTCCTAGTGGAAACACATGGCAAGTTCGATTAAGTAAGCAGGACAATGATATATTCTTTCATCATGGATGGCCAACATTTGTGGGAGATCATTGTTTAGAATGTGGTGACCTTTTGGTTTTCAGATATGAGGGTAACTTGCATTTCACTGTGCAAGTATTTGATAAGAATGCATGTGAGAAAGAAGCAGCATTTCATTCTGAATGCAGTCAAAATTCGTGCAACTTTATTAATATTAAAGGACAGCAAAGAGATAGTAAGGAAAATTCTTCTTTGGATGTTGTTGAAGGTGTTCCAAAGAAAATGAGACATAGCACCATTGACAACCAGGAACTTGAGCTGGGAATTGTTGGAAAAGAACTAACAAAGTATGAGGTAGTAAAACCAATTAGCATGTTCAGAGAATCGGAAGAAACCTCCAACACCTTTCACATGGAAAATAACCATGAAGATGAAGACGCAGCCATCCTGTATCGAAGTGGGAAGGAAGATGAGCATTATAATCTTAGTGGAGTTTCACTATCAAAGTTATCATCAGCACATGATGAGAAAAAAGTTGCTCAGTCATTTACTTCGTCTTTTCCATATTTTGTTAGAATAATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAATTTTCGATGGCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAACTTGAAGGGAGAACACTGGACTGTTAATTCTGTGCCAACCACTAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAACATAAAGGTTGGAGATATCTGCATTTTTGAACTTATACATGAGTGTGAATTACGCGTTCACATTGCTGGGGTTGGAAGAGATGGGATAGGCTGCCAGGATGAAAAACTAGCTTTTAGTATGCCTAATGCAGGACATGCTGTCACTTGCCATAAGACTTCCGGATATATGCCAATGAATCCTAAAGTCAGCTCAAAATGCATAAGCAAAGTTGATCTTCCAGAGAAGAAGTGGACAAAGGTTGGTCAAGAAGCTGTTTTATCAGCTGATTTAAAGAAATCTGGTAGAGCTTCAAATACTTCCAAGAAGATGGGGGTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTGTTCAGAGGAAACATCGAGTTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTTGATGAAAAAAGAGTGGCTCAAGCTTTTACTTCACCTTTTCCTAGTTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCTGCACATCTCCCCACATACAAAACAGAAGTTATGCTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCAGAACGATTCACACCTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCTCAGTGTGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCAAAATGGGGATGTGTGA 1671 0.3962 MQKIPDAFICRMEGRSYGIVLLTGPSGNTWQVRLSKQDNDIFFHHGWPTFVGDHCLECGDLLVFRYEGNLHFTVQVFDKNACEKEAAFHSECSQNSCNFINIKGQQRDSKENSSLDVVEGVPKKMRHSTIDNQELELGIVGKELTKYEVVKPISMFRESEETSNTFHMENNHEDEDAAILYRSGKEDEHYNLSGVSLSKLSSAHDEKKVAQSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELIHECELRVHIAGVGRDGIGCQDEKLAFSMPNAGHAVTCHKTSGYMPMNPKVSSKCISKVDLPEKKWTKVGQEAVLSADLKKSGRASNTSKKMGVCPQSKAAHKKLAVQRKHRVEDELSSQAKAGLRMLFALDEKRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVMLRNSRGECWTVNSVPDAKGRTIHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGDV 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi126g00058 556 Gene3D - 434 544 IPR015300 -
Sebi126g00058 556 Gene3D - 201 315 IPR015300 -
Sebi126g00058 556 CDD B3_DNA 4 78 IPR003340 GO:0003677
Sebi126g00058 556 SUPERFAMILY DNA-binding pseudobarrel domain 213 314 IPR015300 -
Sebi126g00058 556 SUPERFAMILY DNA-binding pseudobarrel domain 442 543 IPR015300 -
Sebi126g00058 556 Pfam B3 DNA binding domain 449 536 IPR003340 GO:0003677
Sebi126g00058 556 Pfam B3 DNA binding domain 220 312 IPR003340 GO:0003677
Sebi126g00058 556 Pfam B3 DNA binding domain 4 80 IPR003340 GO:0003677
Sebi126g00058 556 CDD B3_DNA 447 541 IPR003340 GO:0003677
Sebi126g00058 556 ProSiteProfiles B3 DNA-binding domain profile. 449 545 IPR003340 GO:0003677
Sebi126g00058 556 Gene3D - 1 82 IPR015300 -
Sebi126g00058 556 ProSiteProfiles B3 DNA-binding domain profile. 220 316 IPR003340 GO:0003677
Sebi126g00058 556 SMART B3_2 449 545 IPR003340 GO:0003677
Sebi126g00058 556 SMART B3_2 7 80 IPR003340 GO:0003677
Sebi126g00058 556 SMART B3_2 220 316 IPR003340 GO:0003677
Sebi126g00058 556 SUPERFAMILY DNA-binding pseudobarrel domain 4 85 IPR015300 -
Sebi126g00058 556 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 316 IPR044837 -
Sebi126g00058 556 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Sebi126g00058 556 CDD B3_DNA 218 312 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi126g00058 Sebi-Chr126 1492504 1495513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi126g00058 3 304 B3 DNA Binding Superfamily AT3G18990 23.975 1.82e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi126g00058 B3 3.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi126g00058 - - gmx:100814386 927.932