Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi126g00056 ATGGGAGCACAACAAAACTGTGATGGCTGCAGATCATGGGTGGAAGACATTTACTGGACCCATTTCCAGTTCCTCCATTTCGCACAATTTCTCCGTACCGATTATGAACAACACCTTGCACTTCCCAAAACTTTTTCTGATAATTTAAAGAAGAAGTTGCCAGAAAATGTGTCCCTTAAAGGTCCTGGTGGTGTTGTGTGGAACATAGGGCTGACAACTAGAGATGATACCTTGTACTTCACTCATGGTTGGGAACAATTTGTGAAGGATCACTCTCTAAAAGAGAATGATTTCCTAGTCTTTAAATACAATGGTGAATCACTGTTTGATGTTTTAATATTTGATGGGGAGAGCTTCTGTGAGAAAGCAGCTTCCTATTTTGTTAGAAAATGTGGGCATGCTGAACATGGGGGTGGATGTTCTAGCAAGAGAAGAGACACAGATAACTCTGTTGATGAAGTTAATACTCCTTCTAATGGGGGTGTTGAATGTGTTTCACCTGACAAGTCTGTGCATCTTAACAGTGTTCAAGTGCCATTTGCTGTACCTTGTGAAACTCCTAATGAAAAGACTTATAATGGTGGTGTTGAATCTGCCTGTGCTGAGCAATTTATGGCTGATGCAGTTCCTGAGCAGTTTGTGGCTGAACCAGTCACTGATACTGAAGCAGTAGCTGTGCCTGTTCCTTCCCAAACTATCGGCAAAAGGATCAGTAGGTCCGTTTATGCTGTTAAGCCTGTCCAGCATAAGCGGAGAGGAAGACCACCAAAAGCATCTAATTCTCGTGAGAGAGCACTTAACTGGGTTACTGAATCTGAGACTGCTTCAGGGGGTAAATCTGGGAGTGGATCACCTGAATTATATATCTCAAATAGAAGGCCTGTCACAGAAAATGAGATTAAAAATACCCTCCAGATGGCTCAGGCAGCATGTACCAACGACAGTGTGCACGTGACTATGCGACCTTCGCACGTATACAAGAGATTCTTCGTGTCAATGCCTAATAAGTGGATATTAAACCATTTGTCTCCAACATCCCAAGATGTGATATTACGCCATGGCAATGGTGAATGGGTTGCCAAATACAGCTTCCACAATATTCGTCAAAATGGAGGACTTTCTGGTGGGTGGAAACGTTTTGTTTTGGATAATAACCTTGAAGAGTTTGATGTCTGTGTGTTTAAACAAGCAGGGCACATGAGCGGCACATTGATCATGAATGTGGACATTTTTAGAGTTGTTGAGGAGACTATTCCCCCTACCCCGGTGAAGACTCCAGGAAAAAAGAGTAACAAGAAAAAAGTAATCAGTGCCATTTAG 1320 0.4242 MGAQQNCDGCRSWVEDIYWTHFQFLHFAQFLRTDYEQHLALPKTFSDNLKKKLPENVSLKGPGGVVWNIGLTTRDDTLYFTHGWEQFVKDHSLKENDFLVFKYNGESLFDVLIFDGESFCEKAASYFVRKCGHAEHGGGCSSKRRDTDNSVDEVNTPSNGGVECVSPDKSVHLNSVQVPFAVPCETPNEKTYNGGVESACAEQFMADAVPEQFVAEPVTDTEAVAVPVPSQTIGKRISRSVYAVKPVQHKRRGRPPKASNSRERALNWVTESETASGGKSGSGSPELYISNRRPVTENEIKNTLQMAQAACTNDSVHVTMRPSHVYKRFFVSMPNKWILNHLSPTSQDVILRHGNGEWVAKYSFHNIRQNGGLSGGWKRFVLDNNLEEFDVCVFKQAGHMSGTLIMNVDIFRVVEETIPPTPVKTPGKKSNKKKVISAI 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi126g00056 439 CDD B3_DNA 27 115 IPR003340 GO:0003677
Sebi126g00056 439 MobiDBLite consensus disorder prediction 136 151 - -
Sebi126g00056 439 Gene3D - 21 120 IPR015300 -
Sebi126g00056 439 Pfam B3 DNA binding domain 37 115 IPR003340 GO:0003677
Sebi126g00056 439 Pfam B3 DNA binding domain 318 406 IPR003340 GO:0003677
Sebi126g00056 439 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Sebi126g00056 439 SMART B3_2 27 117 IPR003340 GO:0003677
Sebi126g00056 439 SMART B3_2 316 414 IPR003340 GO:0003677
Sebi126g00056 439 ProSiteProfiles B3 DNA-binding domain profile. 316 414 IPR003340 GO:0003677
Sebi126g00056 439 SUPERFAMILY DNA-binding pseudobarrel domain 316 401 IPR015300 -
Sebi126g00056 439 MobiDBLite consensus disorder prediction 135 163 - -
Sebi126g00056 439 CDD B3_DNA 319 412 IPR003340 GO:0003677
Sebi126g00056 439 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 416 IPR044837 -
Sebi126g00056 439 MobiDBLite consensus disorder prediction 263 289 - -
Sebi126g00056 439 Gene3D - 295 416 IPR015300 -
Sebi126g00056 439 SUPERFAMILY DNA-binding pseudobarrel domain 24 115 IPR015300 -
Sebi126g00056 439 MobiDBLite consensus disorder prediction 246 289 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi126g00056 4 412 REM Transcription Factor Family AT4G33280 35.012 1.75e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi126g00056 B3 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi126g00056 - - mtr:11414255 601.282