Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi126g00052 ATGCCTTATCCAGACCTAAGCTTTGTTGATGTGTCTTCTGCTGTTGTCCGTCAGAATTTACGACCAGAAATCCCAAGGTGTTGTCCAAGTGCCTTAGGAAATATCATGAGGAAATGTTGGGATGCAAATCCAAACAAGCGTCCAGAAATGGATGAGGTGGTGAGAATGCTAGAAGCAATTGATACTACCAATGGTGGTGGAATGATACCTGAAGACCAGACTACAGTTTATAGCTCTATCAGTCAACATCCTTTCCTGATGGAGGATATGATCATTATACTAGCAGAGATATTCTCTCTGCTATTTTATACTAATGGTGTTGGTGGCACTCAGAGTCAAACCTCAGTCATGGAAACTATTCCTTGGGGTTGTGATATTGATTCTTTAGAGAATGCATCAGCTCTCCAGAGATGGTTATTAGAGTCAGGCCTTCCACTACAGAAGATGGCCATAGACAAAGTGGATGTGGGAGAAAGAGGACTTGTCTCCTTGAAGAATATAAGGAAAGGGGAGAAAGTGCTCCTTGTGCCTCCCTCACTAGTTGTAACTGCAGATTCTGTAAGGCCTTTTTTTCTTCTTCCTTTGCCATTGCCTTACTTTCCTTAG 606 0.4241 MPYPDLSFVDVSSAVVRQNLRPEIPRCCPSALGNIMRKCWDANPNKRPEMDEVVRMLEAIDTTNGGGMIPEDQTTVYSSISQHPFLMEDMIIILAEIFSLLFYTNGVGGTQSQTSVMETIPWGCDIDSLENASALQRWLLESGLPLQKMAIDKVDVGERGLVSLKNIRKGEKVLLVPPSLVVTADSVRPFFLLPLPLPYFP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi126g00052 201 Gene3D Transferase(Phosphotransferase) domain 1 1 83 - -
Sebi126g00052 201 Pfam Protein tyrosine and serine/threonine kinase 2 57 IPR001245 GO:0004672|GO:0006468
Sebi126g00052 201 Gene3D set domain protein methyltransferase, domain 1 110 197 - -
Sebi126g00052 201 SUPERFAMILY SET domain 131 194 IPR046341 -
Sebi126g00052 201 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 60 - -
Sebi126g00052 201 SUPERFAMILY Protein kinase-like (PK-like) 1 57 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi126g00052 Sebi-Chr126 1266248 1267299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi126g00052 1 73 MAP Kinase Kinase Kinase AT3G22750 80.822 5.13e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi126g00052 PK_Tyr_Ser-Thr 2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi126g00052 - - gmx:100820513 146.362