Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi126g00047 ATGCTAAGAGACGAAAGCGTGGGTTCAATAAGCGCGAGGCACAGCGCCACCACCGTTTCTACAGTGTCGAATAAGGTTCTGGTGGCGGTTAAGGCGGAGAAGGTGATCTCCAACACCGCATTAGCTTGGGCACTCACTCATGTTGTTCACTCCAGCGACTCCATCACTCTGCTCGCCGTTTATTCTGCCGAGAAAACTGGCAGAAGATTCTGGAACTTTTCGAGATTTGCTGGGGACTGTACGAACGGACGCGCGGGAAAGTTGCCGGAGCGGATTTCTGATATCTCTGAGTCTTGTGCTCAGATGGTGCTTCAGTTGCACAATCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTTACGGGTAGTCCCAGTGGCGCTGTGGCGGCTGAAGCTAGATGGAGTGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTGAAGCATTGCATGGATGAACTAAACTGTAACATTGTGGTGATGAATGGCTCTCAGCCAAAAGTCCTCAGGCTTAACTTAGGATCCTCCGATGAACTCCAAACTCCTTTTTTCTCTGCTGCTTCTTCGCCAGGCATAGAAATTGGAAAGCTAAAAGGGCGCAGATTGAAGCATTCCACCCCAGTAAGTAGCCCTGAAGAAGCAGAAGCAGGTACTTCTGTTACAAGAAACACAGGAGCAAATTCAGTGTCAAGTTCTGACTCAACGACTTCTCCTTTCCTAGTCTATGAACAAAACCCCCTATACGAGGGTCAGGGACCACAGAAAAGAACAGACAAACCAATCAACGAGCCAAAAGATTTCAACGTCCATCCACCATTGTACTCTGATTTGGAAAAGGATCGTCTACCCCTTTTGTGGACACGCCCAACATCGTCTGTGGCTAGTGATAGCAAGACTTTATTTTGGATTCATCAAAACCACATTATGAATGAAAAACCTCAGAAAGCTGAAAGCAGAATTATCCAAAGAACTAAATCCCCAACTTCTAAAACCTTACTAGAGAATTTTATACATGGTGATCAAGAGATGAGAGCAGATGAACTTGGGTTTAACCAAGCTCAAAGTAGAAGTTATGTTAAAAACTCGGGAATAAAAATGATTCCATTCCTTTGGGCAGAACTTCCTCTATTCCTCCTCCCTTATGCTCACAGTGTCAGAATAAAGCACCAGTATTCGGAAAGCCTCCTAGACGGTGGATTTGGTGTAGTTCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCAGTGAAACAGTTAAAGTTTAGTGGCTCTCAAGCAGATATTGATTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCTCAACACAGAAATGTTGTATTGTTGATAGGATTTTGTACAGAAGGCAATTTGAGGATTTTAGTCTATGAGTACATATGTAACGGATCCTTGGACCTCTGCTTACATGGAGAAGAGAGTTTACCGTTGGATTGGAACTCCCGCTTAAGGATAGCAATTGGAGTTGCACGAGGCTTACGCTACCTCCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGACCCAAAAATATCCTCTTAACCCATGATTTTGAACCTCTGGTGGCTGATTTTGGGCTTGCTAGATGGCACTCAGAATGGAATATAAATACTGAAGATCGCGTTATAGGAACTTCAGGGTACCTTGCACCGGAGTATCTTGAGGCTGGAAATCTAACATATAAAGTAGATGTATATGCATTTGGAATTGTTTTATTGGAGTTAATAACCGGTCGAAGGATTAGTGAGCTGGAACAGTTTAATGGACACTCCTATATTTCTGAATGGTTTCACCCCATACGCATGTTAGAGCCCACTCATATCATACAAAACGTTCGATCTCTTAACCCGTGCTTGGATTCTGAGGCGTCACTGGAATTTAATCTGCAATTGCAAGCCATGGCACGAGCTGCTTCATTGTGTCTACGTCTGGATCCTGATGCCAGACCCCCAATGTCAAAGATCCTCAGAGTGCTGGAAGGGGGCGATCCAGCAGGTCCTATGGGTTTAGACATCAATTCAGTTGGCAACAGAAGTGGCCATTTAAGTGGTTTGACTTCGCACACTCCACCTAAAAGTACAGTAAGCCATTCTCGTAGGCTATCACATTGA 2142 0.4458 MLRDESVGSISARHSATTVSTVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAEKTGRRFWNFSRFAGDCTNGRAGKLPERISDISESCAQMVLQLHNQIEVRVKIKVVTGSPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCNIVVMNGSQPKVLRLNLGSSDELQTPFFSAASSPGIEIGKLKGRRLKHSTPVSSPEEAEAGTSVTRNTGANSVSSSDSTTSPFLVYEQNPLYEGQGPQKRTDKPINEPKDFNVHPPLYSDLEKDRLPLLWTRPTSSVASDSKTLFWIHQNHIMNEKPQKAESRIIQRTKSPTSKTLLENFIHGDQEMRADELGFNQAQSRSYVKNSGIKMIPFLWAELPLFLLPYAHSVRIKHQYSESLLDGGFGVVHKGILKDGQVVAVKQLKFSGSQADIDFCREVRVLSCAQHRNVVLLIGFCTEGNLRILVYEYICNGSLDLCLHGEESLPLDWNSRLRIAIGVARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWHSEWNINTEDRVIGTSGYLAPEYLEAGNLTYKVDVYAFGIVLLELITGRRISELEQFNGHSYISEWFHPIRMLEPTHIIQNVRSLNPCLDSEASLEFNLQLQAMARAASLCLRLDPDARPPMSKILRVLEGGDPAGPMGLDINSVGNRSGHLSGLTSHTPPKSTVSHSRRLSH 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi126g00047 713 MobiDBLite consensus disorder prediction 686 713 - -
Sebi126g00047 713 MobiDBLite consensus disorder prediction 198 271 - -
Sebi126g00047 713 Pfam Protein tyrosine and serine/threonine kinase 394 625 IPR001245 GO:0004672|GO:0006468
Sebi126g00047 713 MobiDBLite consensus disorder prediction 213 244 - -
Sebi126g00047 713 FunFam Os07g0541700 protein 467 555 - -
Sebi126g00047 713 Gene3D Phosphorylase Kinase; domain 1 397 467 - -
Sebi126g00047 713 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 381 466 - -
Sebi126g00047 713 Gene3D Transferase(Phosphotransferase) domain 1 468 674 - -
Sebi126g00047 713 SMART tyrkin_6 391 669 IPR020635 GO:0004713|GO:0006468
Sebi126g00047 713 MobiDBLite consensus disorder prediction 677 713 - -
Sebi126g00047 713 Gene3D HUPs 10 180 IPR014729 -
Sebi126g00047 713 ProSiteProfiles Protein kinase domain profile. 391 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi126g00047 713 ProSitePatterns Tyrosine protein kinases specific active-site signature. 512 524 IPR008266 GO:0004672|GO:0006468
Sebi126g00047 713 SUPERFAMILY Protein kinase-like (PK-like) 375 669 IPR011009 -
Sebi126g00047 713 PANTHER OS01G0750732 PROTEIN 230 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi126g00047 Sebi-Chr126 1153542 1159107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi126g00047 380 665 Trihelix Transcription Factor Family AT1G68690 44.637 5.22e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Sebi126g00047 PK_Tyr_Ser-Thr 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi126g00047 - - gmx:100813141 1153.27