Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi126g00030 ATGGGTTGGCTTAGCAGAATTTTTAAAGGCACAGACCATAAGGTTTCAGAAGGGCATTACTATAAAGAGGAAGCAGATTATTATTTACCATCAACTTCAGGGGATGTTTGGACCAAGAACGAGAATGAAGATATTGATCGTGCTATTGCACTGTCTCTGGTAGAAGAAAATCAGAAAGTGAACAATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACTACTTGCCAGAGCTATAGAAGAAAGCCTAAATTTGGAGTCTCCTCCCAGATATGGAAATGATAATAATATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATTTGTGCTGGCTGCAATACTGAGATTGGCTATGGACGATATCTAAATTGCTTGAATGCATTATGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAGTGTGATGTCTGCAAGCACTTTATTCCAACAAACCATGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATAATACTCCTCGCTGTTGCAGCTGTGAACGAATGGAGCCACAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCCATCATGGATACTAGCGAATGCCAGCCCCTTTATGCTGATATACAAAAGTTTTATGAAAGCCTAAATATGAGACTAGATCAGCAAATTCCACTTCTGTTGGTTGAAAGACAAGCGCTGAATGAAGCAAGAGAGGGAGAGAAGAATGGTCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTGTTTCAAGACGACCTAGACATGGGACAGGAAATAGAGCAATAGACATGAGAACACAGCCATACAAACTGACTTCACGCTGTGATGTGACAGCAATTCTCATATTATATGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTGAAAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAGCTTTCTTCTGCGTCAGGCAGCAACTTTGTATCAACCTCATCCTCATCTGCATCATATGCATCGAGAAAAGGTAAAAGACCTGATTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGATTTAGGGCAGGTTATAGAGCAGTGCGTAAATATGGGCTACAAAGGACCCTTCACCATATCAGGATGACGGGGAGTTTTCCATATGAATTATAG 1425 0.4239 MGWLSRIFKGTDHKVSEGHYYKEEADYYLPSTSGDVWTKNENEDIDRAIALSLVEENQKVNNVNDYRSQLEEDELLARAIEESLNLESPPRYGNDNNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLNALWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNHAGLIEYRAHPFWIQKYCPSHEHDNTPRCCSCERMEPQEAGYIALKDGRKLCLECLDSAIMDTSECQPLYADIQKFYESLNMRLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTVSRRPRHGTGNRAIDMRTQPYKLTSRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSTSSSSASYASRKGKRPDFERKLGEFFKHQIESDISPVYGDGFRAGYRAVRKYGLQRTLHHIRMTGSFPYEL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi126g00030 474 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Sebi126g00030 474 Coils Coil 53 73 - -
Sebi126g00030 474 Pfam LIM domain 112 166 IPR001781 -
Sebi126g00030 474 SMART lim_4 111 163 IPR001781 -
Sebi126g00030 474 Pfam Protein DA1 262 467 IPR022087 -
Sebi126g00030 474 FunFam Protein DA1-related 1 106 165 - -
Sebi126g00030 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 193 - -
Sebi126g00030 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 137 - -
Sebi126g00030 474 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Sebi126g00030 474 SMART uim 71 90 IPR003903 -
Sebi126g00030 474 SMART uim 40 59 IPR003903 -
Sebi126g00030 474 Gene3D Cysteine Rich Protein 108 169 - -
Sebi126g00030 474 CDD LIM_DA1 112 164 - -
Sebi126g00030 474 PANTHER PROTEIN DA1-RELATED 2 3 472 IPR045218 -
Sebi126g00030 474 ProSitePatterns LIM zinc-binding domain signature. 112 146 IPR001781 -
Sebi126g00030 474 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi126g00030 Sebi-Chr126 795886 801042 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi126g00030 DA1-like 5.5e-96 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi126g00030 - - gmx:100783253 848.966