Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi126g00027 ATGGCAAGTGGGTTTGGGGAATCGACAAGCAGGCCACCCCCAAGCCCTTCCTGCTCCAACAACAACAATAACAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGAGTTGGCACAAGACCCTATAATTACCTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTCCACTCACAGTCACAAGAATGCCCAGTGTGCAAGGCACTGATTGAGGAGGAGAAATTGGTTCCTTTATATGGGAGAGGAAAGACATCAACTGATCCGAGATCAAAATCCATTCCTGGTGTTAATATCCCACATCGTCCTGCTGGTCAGAGACCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTACTCAACACGGGTTTGGATTCACAGGTGGATTGGGAGGGTTTGCACCCGCAGCAACAGCTAGATTTGGTAATTTCACATTGTCTGCAGCATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGTTGCATGGGTTTCATGGTGCGACCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGGTTCTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCTGCACACAGTAGATTGGATAGAGTTCAGACTGCTAACAACCAAATTTAAGCTCTTATCGATCTTCTAG 666 0.4444 MASGFGESTSRPPPSPSCSNNNNNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSQECPVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFTQHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAAGFPYGFSNSFHGGHVHRYPLHTVDWIEFRLLTTKFKLLSIF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi126g00027 221 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Sebi126g00027 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 171 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi126g00027 221 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Sebi126g00027 221 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Sebi126g00027 221 MobiDBLite consensus disorder prediction 1 22 - -
Sebi126g00027 221 CDD RING-HC_AtRMA-like 30 74 - -
Sebi126g00027 221 SMART ring_2 32 72 IPR001841 -
Sebi126g00027 221 MobiDBLite consensus disorder prediction 86 123 - -
Sebi126g00027 221 SUPERFAMILY RING/U-box 29 85 - -
Sebi126g00027 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Sebi126g00027 221 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi126g00027 Sebi-Chr126 684372 685117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi126g00027 16 202 C3H Transcription Factor Family AT1G19310 67.172 1.26e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi126g00027 K10666 - gmx:100527488 342.428