Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi125g00042 ATGTGTGACAAGTCCAGATCTGTTTCCAACATAAACCTTACATCTATTGGACTAAGAGGTACGCTTGAAAGTCTCAATTTCTCATCACTTCCAAACATCCTCTTTCTAAATACAAGTCACAACTCCTTGAATGGAGTTATTCCTCCCCACATTGGGGTGTTGTCTAAACTCACCCATCTTGATCTTAGTCACAATAATCTTTCTGGAACAATTCCATATGAGATAACACAATTAGCCAGCCTTCAAATTTTACATTTGGCTAATAATGTTCTCTCTGGTTCCATTCCTAGAGAAATAGGTATACTAAGGAATTTGAGAGAGTTTAGTATTGATTTTGCCAATCTCACAGGAACAACTATCCCAATTTCTATATGGAAACTAGCTTCTTTGTCATATCTTTCTTTCTGGAAGTGCAATCTCACAGGGTCTATCCCAATTTCTATAGGAAATTTGGCCAACTTGTCATATCTAGATTTAACAGAGAACAATCTTTCTGGTTACATTCCTAAGGAAATTGGAAAATTGTCTAACCTAAAGTATTTATGGCTTGGACATAATAACTTCAATGGTTCTCTTCCTCAAGAAATTGGGAAGTTACAGAGCCTATTGGTTATACATCTTCAGGGAAATAAATTATCTGGCCATATTCCTGCTGGAACTTGGGAGTTGGTCAATGTGAAAGAATTGTGGCTTCAAGACAATAACTTTTCTGGTTTCATTCCTAAAGAGATTGGGAAGTTAGTCAATGTGGAAGAATTGATGCTTACAGGCAATAATCTTTCTGGTTCAATTCCTAAAGAAATTGGGGAGTTGGTCAATGTGAAACAATTGTTACTTCAAGACAATATTCTCTCTGGTTTCATTCCTAAAGAAATTGGAATGTTGACAACTATGTATATGCTTGATTTGTCCATTAATTCTCTCTCTGGTGGTATACCACCAGAGCTAGGCAAGGCAACCAACTTACATGTACTTGACTTGTCTTCAAACCATCTTACAGGGAAAATTCCAAATGAACTTGGCAACTTGACTAAGTTGAACAAACTCATGTTAAGCAGCAATCATCTTTCAGGAAATGTTCCTGTACAAATAGCATCATTACATGATCTGGAAACCTTGGAGCTTGCAGCAAATAATTTAAGTGGTTTCATCACAACACAACTTGCAGGGTTACCTAAGTTGTGGAACTTGAATTTGAGCCAAAATAAATTCAAGGGGAAAATACCTATTGAGTTTGGCCAATTCAAAGCTCTTCAAATTCTTGACCTCAGTGGGAATCTTTTGGGTGGAACAATACCATCTATGTTCTCACAGTTGAAATACATAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTGTCATTCCCTCTAGCTTTAAACAAATGTTAAGCTTGTCTTATGTCGATATATCATACAACCAATTAGAGGGTCCACTTCCAGACATCCCAGCCTTCCATAATGCTAAAATTGAAGCATTGAGAAACAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTAGAGCCTTGCCCAAGATCAAGTGGTGAAACTCAAAATCATAAGAATAACAAAGTCTTATTGATAGTTTTACCCATTACAGTGGGCGCTTTAATACTTGCATTAGTTTCTTTTGGAGTGTCAAAACATCTCTCCCAAACTTCAGCCAATGAAGAATGCCAGGTTGCAGAATCAAAGCTGAAAATCTATTTGCTATATGGAGTTTTGATGGCAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAATATCTCATTGGGGTTGGAGGGCAGGGAAGTGTTTACAGAGCAAAGTTGCATACAGGACAAGTTGTTGCTGTGAAGAAACTTCATTCAACACCAAATGGATTAGAAAGTACTCATTTTTGGTTTGTGATTTATTGGAGAGAGGTAGTGTGGAGGAGATTTTGAAAGATGATCAACAAGCAATTGCATTTGATTGGAACAAGAGGATGAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCACCTCCTATTCATCTTAATCCTAATTCAACCAACTGGACCTCATTTGTTGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTAGTAGCATTGGAAATACTTTTTGGAAAGCACCCTGGAGATGTAATATCTTCTTCCTTGCTATCATCTTCATGGACTGTAGTGAGTGATATTATGGCATTGATGGAGAAGTACTTGGACCAACGTCTCCCTCATCCCACAAAACCAATTGTTGATGAGTTGGTATCAATTGTAAGGATAACAATTGCTTGCTTGACTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAGGTTGCCAAGGAGTTTGTGATCTCAAAGTAA 2427 0.3758 MCDKSRSVSNINLTSIGLRGTLESLNFSSLPNILFLNTSHNSLNGVIPPHIGVLSKLTHLDLSHNNLSGTIPYEITQLASLQILHLANNVLSGSIPREIGILRNLREFSIDFANLTGTTIPISIWKLASLSYLSFWKCNLTGSIPISIGNLANLSYLDLTENNLSGYIPKEIGKLSNLKYLWLGHNNFNGSLPQEIGKLQSLLVIHLQGNKLSGHIPAGTWELVNVKELWLQDNNFSGFIPKEIGKLVNVEELMLTGNNLSGSIPKEIGELVNVKQLLLQDNILSGFIPKEIGMLTTMYMLDLSINSLSGGIPPELGKATNLHVLDLSSNHLTGKIPNELGNLTKLNKLMLSSNHLSGNVPVQIASLHDLETLELAANNLSGFITTQLAGLPKLWNLNLSQNKFKGKIPIEFGQFKALQILDLSGNLLGGTIPSMFSQLKYIETLNLSHNNLSGVIPSSFKQMLSLSYVDISYNQLEGPLPDIPAFHNAKIEALRNNKGLCGNVSGLEPCPRSSGETQNHKNNKVLLIVLPITVGALILALVSFGVSKHLSQTSANEECQVAESKLKIYLLYGVLMAKWCMRILLKPQKSLTTISHWGWRAGKCLQSKVAYRTSCCCEETSFNTKWIRKYSFLVCDLLERGSVEEILKDDQQAIAFDWNKRMNAIKDVANALCYMHHDCSPPIHLNPNSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVVALEILFGKHPGDVISSSLLSSSWTVVSDIMALMEKYLDQRLPHPTKPIVDELVSIVRITIACLTESPRSRPTMEQVAKEFVISK 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi125g00042 808 Gene3D Ribonuclease Inhibitor 119 222 IPR032675 -
Sebi125g00042 808 Gene3D Ribonuclease Inhibitor 1 118 IPR032675 -
Sebi125g00042 808 Pfam Leucine Rich Repeat 56 72 IPR001611 GO:0005515
Sebi125g00042 808 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515
Sebi125g00042 808 SMART LRR_typ_2 78 102 IPR003591 -
Sebi125g00042 808 SMART LRR_typ_2 247 271 IPR003591 -
Sebi125g00042 808 SMART LRR_typ_2 54 77 IPR003591 -
Sebi125g00042 808 SMART LRR_typ_2 151 175 IPR003591 -
Sebi125g00042 808 SMART LRR_typ_2 199 223 IPR003591 -
Sebi125g00042 808 SMART LRR_typ_2 343 367 IPR003591 -
Sebi125g00042 808 SMART LRR_typ_2 439 462 IPR003591 -
Sebi125g00042 808 SMART LRR_typ_2 415 438 IPR003591 -
Sebi125g00042 808 ProSiteProfiles Protein kinase domain profile. 383 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi125g00042 808 SMART LRR_sd22_2 54 77 - -
Sebi125g00042 808 SMART LRR_sd22_2 367 393 - -
Sebi125g00042 808 SMART LRR_sd22_2 223 252 - -
Sebi125g00042 808 SMART LRR_sd22_2 175 190 - -
Sebi125g00042 808 SMART LRR_sd22_2 415 444 - -
Sebi125g00042 808 Gene3D Ribonuclease Inhibitor 225 519 IPR032675 -
Sebi125g00042 808 ProSiteProfiles Leucine-rich repeat profile. 321 344 IPR001611 GO:0005515
Sebi125g00042 808 Gene3D Transferase(Phosphotransferase) domain 1 613 687 - -
Sebi125g00042 808 PRINTS Leucine-rich repeat signature 57 70 - -
Sebi125g00042 808 PRINTS Leucine-rich repeat signature 439 452 - -
Sebi125g00042 808 FunFam Leucine-rich repeat receptor-like protein kinase TDR 203 512 - -
Sebi125g00042 808 Pfam Leucine rich repeat 417 476 IPR001611 GO:0005515
Sebi125g00042 808 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Sebi125g00042 808 Gene3D Transferase(Phosphotransferase) domain 1 688 807 - -
Sebi125g00042 808 SMART serkin_6 585 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi125g00042 808 FunFam Leucine-rich repeat receptor protein kinase EMS1 117 192 - -
Sebi125g00042 808 Pfam Protein kinase domain 689 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi125g00042 808 ProSiteProfiles Leucine-rich repeat profile. 56 78 IPR001611 GO:0005515
Sebi125g00042 808 SUPERFAMILY L domain-like 192 512 - -
Sebi125g00042 808 SUPERFAMILY RNI-like 10 260 - -
Sebi125g00042 808 SUPERFAMILY Protein kinase-like (PK-like) 629 802 IPR011009 -
Sebi125g00042 808 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 223 559 - -
Sebi125g00042 808 FunFam Nuclear pore complex protein NUP107 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi125g00042 Sebi-Chr125 1564465 1567813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi125g00042 7 704 Receptor kinase-like Gene Family AT4G08850 33.956 1.30e-137 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi125g00042 Pkinase 3.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi125g00042 - - gmx:100808316 713.761