Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi125g00041 ATGCTTCAATCCATGAAGCTAGTACCCTTTTGGCTGCTACTTGTAATGTGCTTTTGTGCATTCACAGTGGCGTCTTCTCAACATGTTACAAGTACTTCCAAAAGTGTTTCATCTACTTTTGCCACATTTCAAAGTAGACAAGCAAGTGCTCTGTTAAAGTGGAAAGCCACCTTTGACAAGCAAAGCCAGGCTTTGCTATCTTCATGGAGTGGTAATAGTTCATGCAATTGGCTGGGAATTATGTGTGACAAGTCCAGATCCGTTTCCAACATAAACCTTACATCTATTGGACTAAGAGGTACGCTTGAAAGTCTCAATTTCTCTTCACTTCCAAACATCCTCACTCTAAATATAAGTCACAACTCATTGAATGGAAGTATTCCTCCCCACATTGGGGTGTTGTCTAAACTCTCCCATCTTGATCTTAGTCACAATAATCTCTCTGGAACAATTCCATATGAGATAACACAATTAGCCAGCCTTCAAATTTTACATTTGGCTAATAATGTTCTCTCTGGTTCCATTCCTAGAGAAATTGGTTCATTAAGGAATTTGAGAGAGTTTAGTATTGATTTTGCCAATCTCACAGGGACAACTATCCCAATTTCTATATGGAAACTAGCCTCTTTGTCATATCTTTCTTTTTGGAAGTGCAATCTCACAGGGTCTATCCCAATTTCTATAGGAAATTTGGCCAACTTGTCATATCTAGATTTAACAGAGAACAATCTTTCTGGCTACATTCCTGAGGAAATTGGAAAATTGTCTAACCTAAAGTATTTATGGCTTGGACATAATAACTTCAATGGTTCTCTTCCTCAAGAAATTGGGAAGTTACAGAGACTATTGGTTATACATCTTCAGGGAAATAAATTATCTGGCCATATTCCTGCTGGAATTTGGGAGTTGGTCAATGTGAAAGAATTGTGGCTTCAAGACAATAACTTTTCTGGTTTCATTCCTAAAGAGATTGGGAAGTTGGTCAATGTGGAAGAATTGATGCTTAAAGGCAATATTCTTTCTGGTTCCATTCCTAAAGAAATTGGGGAGTTGGTCAATGTGAAACAATTGGCGCTTCAAGACAATAATCTTTCTGGTTTCATTCCTAAAGAAATTGGGAAGTTGGTCAATGTGAAAGTATTGATGCTTCAAGACAATAATCTTTCCGGTTCCATTCCTAAAGAAATTGGAATGTTGACAACTATGTATATGCTTGATTTGTCCAGTAATTCTCTCTCTGGTACAATCCCCTCCACAATTGGAAACTTGAGCAATTTAGAATATCTTTACCTTTATAGCAACTATCTCACTGGTTCCATTCCCAATGAATTTGGAAAACTTCATTCTCTCTACACAATCCAATTGTTAGATAATAACCTCTCTGGATCAATCCCACCTTCCATAGGTAACTTGATCAATTTGGAATCCATTATCATACACCAAAATAGACTCTCTGGACCAATTCCTTCCACTATTGGAAATTTGACACGCCTCACTATATTATCTTTATTCTCAAATGAATTCAGTGGCAACATTCCAAGAGAGATGAACAAGCTTACCAATTTGGTAAACTTGCAATTATCTGATAACAATTTCACTGGTCAAGTGCCGCATAATATTTGCATGAGTGGAAAGTTGACACAATTTTCTGCCATGAATAACCATTTCACAAGCCTTTCAAAGAGTTTGAAGAATTGCTCCAGCCTTATAAGAGTCAGGCTTGAACACAACCAACTGACTGGAAATATAACAGATGAGTTTGGTGTATATCCAAAGTTGGACTACATTGGATTGAGTGAAAATAATTTTTATGGCCACCTTTCACCAAATTGGGGAAAATGCTATAACCTCACAAGCCTCAAGATCTCCAATAATAATTTATCAGGTGGTATACCACCAAACCTAGGTGAGGCAACTGGCTTAAGGGTACTTGACTTATCTTCAAACCATCTTACAGGGAAAATTCCAAAGGACTTAGGTAAGTTGACTTCATTGATCCAACTCTTGATGAGTAGCAATCATCTTTCAGGAAATGTTCCTGTACAAATAGCATCATTGCAGGAACTTGATACCTTAGAGCTTGCATCAAATAATTTAAGTGGCTTCATCACAAAACAACTTGGAGGGCTACCTAAGTTATTGAACTTAAATTTGAGCCAAAACAAATTTGGGGGAAATATTCCAACTCAGTTTGGTGAATTCAAAGTTCTTCAAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAAAAATACCATCAATGCTTGGACAGTTGATCTACTTAATTACATTGAATATCTCACATAATAATCTTTCTGGTACCATTCCTTCCAGCTTCAATGGGATGTTCAGCTTGTCATCTGTTGATATTTCATACAACCAATTAGAGGGTCCACTTCCAGACATCCCAGCCTTCCATAATGCTAAAATTGAAGCATTGAGAAACAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTAGAGCCTTGCCCAAGATCAAGTGGTGAAACTCAAAATCATAAGAATAACAAAGTCTTATTGATAGTTTTACCCATTACAGTGGGCGCTTTAATACTTGCATTAGTTTCTTTTGGAGTGTCAAAACATCTCTCCCAAACTTCAGCCAATGAAGAATGCCAGGTTGCAGAATCAAAAGCTGAAAATCTATTTGCTATATGGAGTTTTGATGGCAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAATATCTCATTGGGGTTGGAGGGCAGGGAAGTGTTTACAGAGCAAAGTTGCATACAGGACAAGTTGTTGCTGTGAAGAAACTTCATTCAACACCAAATGGATTAGAAAGGTCCAATCTAAAAGCTTTCAGAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTCAAGTTATATGGATTTTGTTTGCATTCACAGTACTCATTTTTGGTTTGTGATTTATTGGAGAGAGGTAGTGTGGAGGAGATTTTGAAAGATGATCAACAAGCAATTGCATTTGATTGGAACAAGAGGATGAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCACCTCCTATTGTTCATCGAGATATATCAAGCAAGAATATTCTTTTGGATTTAGAACATGTGGCTCATGTCTCAGACTTTGGAACTGCCAAGCATCTTAATCCTAATTCAACCAACTGGACCTCATTTGTTGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTAGTAGCATTGGAAATACTTTTTGGAAAGCACCCTGGAGATGTAATATCTTCTTCCTTGCTATCATCTTCATGGACTGTAGTGAGTGATATTATGGCATTGATGGAGAAGTACTTGGACCAACGTCTCCCTCATCCCACAAAACCAATTGTTGATGAGTTGGTATCAATTGTAAGGATAACAATTGCTTGCTTGACTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAGGTTGCCAAGGAGTTTGTGATCTCAAAGTAA 3564 0.376 MLQSMKLVPFWLLLVMCFCAFTVASSQHVTSTSKSVSSTFATFQSRQASALLKWKATFDKQSQALLSSWSGNSSCNWLGIMCDKSRSVSNINLTSIGLRGTLESLNFSSLPNILTLNISHNSLNGSIPPHIGVLSKLSHLDLSHNNLSGTIPYEITQLASLQILHLANNVLSGSIPREIGSLRNLREFSIDFANLTGTTIPISIWKLASLSYLSFWKCNLTGSIPISIGNLANLSYLDLTENNLSGYIPEEIGKLSNLKYLWLGHNNFNGSLPQEIGKLQRLLVIHLQGNKLSGHIPAGIWELVNVKELWLQDNNFSGFIPKEIGKLVNVEELMLKGNILSGSIPKEIGELVNVKQLALQDNNLSGFIPKEIGKLVNVKVLMLQDNNLSGSIPKEIGMLTTMYMLDLSSNSLSGTIPSTIGNLSNLEYLYLYSNYLTGSIPNEFGKLHSLYTIQLLDNNLSGSIPPSIGNLINLESIIIHQNRLSGPIPSTIGNLTRLTILSLFSNEFSGNIPREMNKLTNLVNLQLSDNNFTGQVPHNICMSGKLTQFSAMNNHFTSLSKSLKNCSSLIRVRLEHNQLTGNITDEFGVYPKLDYIGLSENNFYGHLSPNWGKCYNLTSLKISNNNLSGGIPPNLGEATGLRVLDLSSNHLTGKIPKDLGKLTSLIQLLMSSNHLSGNVPVQIASLQELDTLELASNNLSGFITKQLGGLPKLLNLNLSQNKFGGNIPTQFGEFKVLQSLDLSGNFLDGKIPSMLGQLIYLITLNISHNNLSGTIPSSFNGMFSLSSVDISYNQLEGPLPDIPAFHNAKIEALRNNKGLCGNVSGLEPCPRSSGETQNHKNNKVLLIVLPITVGALILALVSFGVSKHLSQTSANEECQVAESKAENLFAIWSFDGKMVYENIIEATEEFDNKYLIGVGGQGSVYRAKLHTGQVVAVKKLHSTPNGLERSNLKAFRSEIQALTEIRHRNIVKLYGFCLHSQYSFLVCDLLERGSVEEILKDDQQAIAFDWNKRMNAIKDVANALCYMHHDCSPPIVHRDISSKNILLDLEHVAHVSDFGTAKHLNPNSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVVALEILFGKHPGDVISSSLLSSSWTVVSDIMALMEKYLDQRLPHPTKPIVDELVSIVRITIACLTESPRSRPTMEQVAKEFVISK 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi125g00041 1187 Gene3D Ribonuclease Inhibitor 44 198 IPR032675 -
Sebi125g00041 1187 Gene3D Ribonuclease Inhibitor 199 296 IPR032675 -
Sebi125g00041 1187 Gene3D Transferase(Phosphotransferase) domain 1 990 1186 - -
Sebi125g00041 1187 SUPERFAMILY L domain-like 562 821 - -
Sebi125g00041 1187 SMART LRR_typ_2 519 543 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 375 399 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 231 254 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 255 279 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 303 327 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 134 157 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 423 446 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 734 758 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 639 662 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 158 182 IPR003591 -
Sebi125g00041 1187 SMART LRR_typ_2 471 495 IPR003591 -
Sebi125g00041 1187 ProSiteProfiles Protein kinase domain profile. 910 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi125g00041 1187 FunFam Leucine-rich repeat receptor protein kinase MSP1 873 989 - -
Sebi125g00041 1187 ProSiteProfiles Leucine-rich repeat profile. 640 663 IPR001611 GO:0005515
Sebi125g00041 1187 SUPERFAMILY RNI-like 285 604 - -
Sebi125g00041 1187 FunFam Leucine-rich receptor-like protein kinase family protein 201 298 - -
Sebi125g00041 1187 FunFam MDIS1-interacting receptor like kinase 2 990 1187 - -
Sebi125g00041 1187 FunFam Piriformospora indica-insensitive protein 2 441 538 - -
Sebi125g00041 1187 Gene3D Phosphorylase Kinase; domain 1 869 988 - -
Sebi125g00041 1187 PRINTS Leucine-rich repeat signature 231 244 - -
Sebi125g00041 1187 PRINTS Leucine-rich repeat signature 137 150 - -
Sebi125g00041 1187 Gene3D Ribonuclease Inhibitor 297 393 IPR032675 -
Sebi125g00041 1187 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 346 440 - -
Sebi125g00041 1187 Pfam Protein kinase domain 912 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi125g00041 1187 FunFam Uncharacterized protein 541 838 - -
Sebi125g00041 1187 SUPERFAMILY Protein kinase-like (PK-like) 895 1181 IPR011009 -
Sebi125g00041 1187 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1035 1047 IPR008266 GO:0004672|GO:0006468
Sebi125g00041 1187 Pfam Leucine rich repeat N-terminal domain 46 83 IPR013210 -
Sebi125g00041 1187 FunFam Nuclear pore complex protein NUP107 44 200 - -
Sebi125g00041 1187 Gene3D Ribonuclease Inhibitor 543 838 IPR032675 -
Sebi125g00041 1187 Gene3D Ribonuclease Inhibitor 394 542 IPR032675 -
Sebi125g00041 1187 SUPERFAMILY RNI-like 90 366 - -
Sebi125g00041 1187 PANTHER LEUCINE RICH REPEAT KINASE 2 457 1185 - -
Sebi125g00041 1187 Pfam Leucine rich repeat 737 795 IPR001611 GO:0005515
Sebi125g00041 1187 Pfam Leucine rich repeat 616 675 IPR001611 GO:0005515
Sebi125g00041 1187 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Sebi125g00041 1187 Pfam Leucine rich repeat 402 460 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi125g00041 Sebi-Chr125 1513096 1516829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi125g00041 29 634 Receptor kinase-like Gene Family AT4G08850 36.063 4.26e-103 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi125g00041 Pkinase 9.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi125g00041 - - gsj:114395001 1437.94