Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi125g00032 ATGTCTACTTTGCAGATGTCCCATGTCGATTTAGAGCAAGGGAATCATCGTCGTTCGGTTGTTGGAAGTGATTTGAGTGGTGAAGGGAGCCTGTGTTTCTCTGATGCTGATGATGGTTCCAGCTATTCTCGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCCTGATTCTGGGAGAGCTTCTTCTGCTACTGATTGCTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCAGAGATTAAGGTGCATTTGGCTAAAGTGGAGAGGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAGTCTGGTGCTCCCATCGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCCCACAAGCACTGTGCTGAGACCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGCCATTCTGTTGCACGGAATGTTTATGGAGCAAATGAGGAATCAACAGAGCATGTGACTGACAATAACAATGCTACTGCAACAGCCACACTCTCAACACCAACTCCTTCTGCAGAAACTCAAAGATTTTGGCATGGCCATCGTTTCCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCATCATCATAG 690 0.4406 MSTLQMSHVDLEQGNHRRSVVGSDLSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPEVGGVPDSGRASSATDCSVEVETRTGVPEIKVHLAKVERDCRICHMGLESESHESGAPIELGCSCKDDLAAAHKHCAETWFKIKGNRTCEICHSVARNVYGANEESTEHVTDNNNATATATLSTPTPSAETQRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi125g00032 229 SMART ringv_2 104 157 IPR011016 GO:0008270
Sebi125g00032 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Sebi125g00032 229 MobiDBLite consensus disorder prediction 170 189 - -
Sebi125g00032 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Sebi125g00032 229 SUPERFAMILY RING/U-box 102 160 - -
Sebi125g00032 229 PANTHER ZINC FINGER, RING-CH-TYPE 17 228 - -
Sebi125g00032 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Sebi125g00032 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi125g00032 Sebi-Chr125 1277812 1280564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi125g00032 69 229 C3H Transcription Factor Family AT5G05830 62.963 1.51e-71 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi125g00032 - - gmx:100808666 417.927