Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00122 ATGCGTCTTCTTGTTCTTGGGGCAAGTTCCCATGTAACAACCTATAGGTATGCTAGTCCTGCAACTGCTGCTAATGCAAGAATAATGAGTGATTGCCCTCTTGTTCTCTGTTCTCATTTAAAAACAGAGATACTATACTCAAATACAGATTTCACCAAGTTCCACATTGGGCAAGGAACTTACAGCAGTGTTTATAGAGCTCGTGATCTTGAAACAAATAAAATTGTCGCATTGAAGAAGGTTCGATTCGCTAACATGGACCCAGAAAGTGTTCGTTTTATGGCAAGAGAAATTCTTGTGCTGCGAAGACTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTGTTTTTGAATATATGGAGCATGATCTTGCAGGCCTTGCAGCAATACCAGGCATCAAGTTTACTGAAGCACAGATCAAGTGTTATATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGCGACATCAAGGGATCCAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCCACTTTGTTTCAGCCATCTCAAGGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAATTGTTTGCTGGGAAGCCTATAATGCCTGGAAGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATATTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAGCCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCACTGAGCCTCTTGGAGGTCCTACTTGCTATAGAACCAAAAGATAGAGGAACTGCATCTTTAGCCCTTCAAAATGAGTTCTTCACAGCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAATACCCACCAAGTAAAGAGTTTGATGCCAAACTTCGAGAAGAGGAAGCTAGAAGACAAAAAGCTGCAAATAAAGGACATGGACAAGAATCGGTTAGCAGGAGTTCAAGAGAGTCTAAAGCTAGGCCGGCACCTGATGCTAATGCTGAGTGTCAGGCATCAATAGAGAAGAGACAAGGACAGTGTAATTCTAAGTGCATTAGTGATAAGTACAATCCTGAAGAGGATGGCGGTTGTGGCTTCCCTCTTGAACCTACAAAATCAAGAGCACTCAATGTTTTCTCTCATTCTGGCCAGTCAATGCATCCAAGTGCGTATGGATCCTCACGCAATATGAATTTAAAAGAGGAAGATGTTCTTACTGGCCCTAATCATGTCTTTACATCAAGAAACCCTGAGTTGAGAAAACAAAAATCCTACTGGCATGGCAGCACTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAACTCGAGGTAATTCACGGCTTGATATGAGTGGAGACTGTAGTGTGAATTCAGAGTGGCCAGAGGATCACTTTGGTATGAGATATAGTCATCTAGCCGATGGTGAGTCTAGCCAATTGCTGGATGGACCCAAGTCTTCATGCAAGAATGACTTCCATCTACTTGGGAAGGATCGTGCCATGAGCTATGCTACCAAAAGCCGCATCCACTATTCGGGACCATTGCTGCCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAGCACGAAAGGCAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGATAAGGACAAGATAAAAAAGGCTGACAGTGAGAATAGCCTAACTGAATCACTATTTCACCATGTGAGAAATCACAGCTGA 1893 0.4263 MRLLVLGASSHVTTYRYASPATAANARIMSDCPLVLCSHLKTEILYSNTDFTKFHIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREILVLRRLDHPNVMKLEGMITSRVSGSLYLVFEYMEHDLAGLAAIPGIKFTEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIGDFGLATLFQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLEVLLAIEPKDRGTASLALQNEFFTAKPLPCDPSTLPKYPPSKEFDAKLREEEARRQKAANKGHGQESVSRSSRESKARPAPDANAECQASIEKRQGQCNSKCISDKYNPEEDGGCGFPLEPTKSRALNVFSHSGQSMHPSAYGSSRNMNLKEEDVLTGPNHVFTSRNPELRKQKSYWHGSTAKLSRFSNSVATRGNSRLDMSGDCSVNSEWPEDHFGMRYSHLADGESSQLLDGPKSSCKNDFHLLGKDRAMSYATKSRIHYSGPLLPPEDNLEEMLKEHERQIQQAVRKARLDKDKIKKADSENSLTESLFHHVRNHS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00122 630 SMART serkin_6 50 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00122 630 Coils Coil 581 608 - -
Sebi124g00122 630 MobiDBLite consensus disorder prediction 359 391 - -
Sebi124g00122 630 Coils Coil 352 372 - -
Sebi124g00122 630 CDD STKc_CDK9_like 56 334 - -
Sebi124g00122 630 Gene3D Phosphorylase Kinase; domain 1 51 137 - -
Sebi124g00122 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Sebi124g00122 630 Gene3D Transferase(Phosphotransferase) domain 1 138 374 - -
Sebi124g00122 630 MobiDBLite consensus disorder prediction 598 630 - -
Sebi124g00122 630 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Sebi124g00122 630 FunFam probable serine/threonine-protein kinase At1g54610 41 132 - -
Sebi124g00122 630 SUPERFAMILY Protein kinase-like (PK-like) 55 341 IPR011009 -
Sebi124g00122 630 PANTHER CELL DIVISION PROTEIN KINASE 55 340 - -
Sebi124g00122 630 Pfam Protein kinase domain 55 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00122 630 ProSiteProfiles Protein kinase domain profile. 50 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00122 630 MobiDBLite consensus disorder prediction 359 398 - -
Sebi124g00122 630 FunFam probable serine/threonine-protein kinase At1g54610 133 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00122 Sebi-Chr124 1377105 1381664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00122 56 372 Core Cell Cycle Gene Families AT5G10270 51.506 3.71e-112 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sebi124g00122 Pkinase 1.5e-68 CL0016