Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00114 ATGGCGTCTGCTAGCCTTGGAAATGGTGGCGTCGGTAGTTCCAGGTCTGCCTTAAGAGGTTCTTCTAGTTCTGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGAGGTTGAGGGACAAGGTCGACCACGATGAAGACAGAGATAGTGAGCCTGACATCATTGATGGTGTGGGTGCTGAAACAGGACATGTGATAAGAACCAGCATTGGTGGCCGAAATGGTCAGACTAAGCAGAATGTTAGTTATATTGCGGAGCACGTAGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCAAAATGTAGAGAAACTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTAAGGCATTGTTTCTTTTCAACGACCGACAAAGAAGAACTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGAATTGCAAGGAACTATAGCAGGATTAACCAGAGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATATGCAGGGCCCTTGCTTATATACATAACTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCACACACCCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCCAATGTTTCTTACATCTGTTCAAGATACTATCGAGCCCCTGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTGATGGCTGAGTTGCTTCTTGGACAGCCCTTGTTCCCTGGAGAGAGTGGAGTTGATCAACTAGTTGAAATCATCAAGGTTTTGGGAACACCCACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAGTTTAAGTTTCCGCAGATAAAACCTCATCCTTGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAATTGAGGGACCCGAACACCCGCCTTCCTAATGGTCGCCCACTTCCTCCACTGTTTAATTTTAAATCTCAGGAACTTTCTGGGATACCCCCTGATGTCATCAATCGGCTTATTCCGGAGCATGCTCGCAAACAGAACTTATTTATGGCTTTGCACACCTAG 1263 0.4378 MASASLGNGGVGSSRSALRGSSSSVDWLGREMLEMRLRDKVDHDEDRDSEPDIIDGVGAETGHVIRTSIGGRNGQTKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKSQELSGIPPDVINRLIPEHARKQNLFMALHT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00114 420 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Sebi124g00114 420 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 50 412 - -
Sebi124g00114 420 CDD STKc_GSK3 77 369 IPR039192 -
Sebi124g00114 420 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Sebi124g00114 420 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00114 420 FunFam Glycogen synthase kinase-3 beta 66 161 - -
Sebi124g00114 420 MobiDBLite consensus disorder prediction 1 21 - -
Sebi124g00114 420 FunFam Shaggy-related protein kinase kappa 162 410 - -
Sebi124g00114 420 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00114 420 Gene3D Transferase(Phosphotransferase) domain 1 162 410 - -
Sebi124g00114 420 SUPERFAMILY Protein kinase-like (PK-like) 81 393 IPR011009 -
Sebi124g00114 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Sebi124g00114 420 Pfam Protein kinase domain 84 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00114 Sebi-Chr124 1313743 1320958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00114 88 374 Core Cell Cycle Gene Families AT1G76540 34.915 2.66e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sebi124g00114 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00114 K03083 - jre:108983720 824.698