Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00109 ATGGCTCACACACCTTTCCCTTGCAGGAAACAACTTCACTGGCACCATTCACATCCCAACTCGACCAACCTTCAATTTCTCAACATCTCCGATAACCAGTTCAGTGGTGACTTAGATTGGGACTATTCCACCATGGACAACTTACAAGTTGTTGATGCCTATAACAATAACTTAACTTCCTTGCTTCCTTTGGGGGTTCTGAATTTGAAGAGGCTTAGGTACTTGGATCTTGGAAATGACATTCGTGGGAAAATCCCAGGTGAGTTGGGCAATCTGAGTAACCTGAGGGAGATTTACTTGGGCTATTACAATTCCTTTGAAGGTGGGATTCCAGTGGAGTTTGGAAAGTTGGTAAATTTAGTTCACATGGATCTCTCAAGCTGTGATTTGGATGGTCCAATTCCAAGAGAGTTAGGAAACTTGAAGGAGCTAGACACCCTTTACTTGCATATCAATCAGCTTTCAGGTTCTATACCAAAACAGCTAGCCAACTTGACTAATTTGGTGAACCTTGATCTCTCCAGCAATGCACTCACTGGGGAAATCCCATTTGAGTTCATCAACCTTAAAAAGCTCAAGCTTTTCAATCTTTTCCTCAACAGGTTACATGGGTCCATACCAGACTACATTGCAGACTTGCCAGATTTAGAGACACTTGGGCTGTGGATGAACAACTTCACAGGAGAAATTCCACAGAACCTTGGTCTGAGTGGGAAGCTTCAAGTGCTTGATTTGTCCTCCAATAAGCTCACTGGTTTCATTCCTCCTCACCTATGTTCCTCAAACCAGCTCAGGATTTTGATTCTTCTCAATAACTTCCTCTTTGGACCCATACCTGAAGGTGTGGGAACATGTTACAGTCTCACTAGAGTGAGATTAGGACAGAATTACCTGAATGGTAGCATTCCAAATGGATTTCTTTACCTTCCTAAGCTAAATCTAGCTGAGTTACAGAACAATTACTTGTCAGGAACTTTGCCAGAAAATGGTAATAGTTCCTCTCAGCCTGTTCATTTAGAACAACTTGATTTGTCAAACAATGCCTTGTCTGGTCCTTTACCATATTCACTCTCAAATTTCTCCTCCATTCAAATCCTTCTTCTCAGTGGAAACCAGTTCTCAGGTCCAATCCCACCCTCCATTGGAGGACTCAATCAAGTGCTTAAGCTTGACCTTAGCAGAAATTCATTATCCGGAGAAATTCCACCTGAAATTGGGTACTGTGTCCATCTCACCTACCTTGACATGAGCCAGAACAACCTCTCAGGTTCCATCCCACCTGTGATTTCCAATATCCGCATTTTAAATTACTTGAACTTGTCAAGAAACCATTTGAGCCAAACCATCCCAAGGTCAATTGGTTCCATGAAAAGCCTCACTGTTGCTGATTTCTCCTTCAATGAATTCTCTGCCATTATAAAGGCCAAGTCTTTCAAAAAGAAAGGTCCAGGTTCATGGAAGATGACTGCATTCAAAAGATGGGAATGTGATTGGAAGAGGAGGTGCTGGGATTGTTTACCATGGAAAAATGCCAAATGGGGTCGAAATTGCAGTGAAAAAGCTTCTGGGTTTGGAGCAAACAGCCATGATCATGGCTTCCGAGCTGAAATTCAAACACTAGGAAACATAAGGCATAGAAACATAGTGAGGCTAGTTGCATTCTGCTCCAACAAAGAGACCAATCTGCTGGTGTATGAGTACATGAGGAATGGGAGCTTAGGGGAGTCATTGCATGGGAAAAAAGGTGCATTCTTGAGTTGGAACTTGAGGTACAAAATTTCCATTGACTCAGCTAAAGGACTCTGTTACCTTCACCATGATTGTTCACCTTTGATCGTCCACCGAGACGTGAAATCCAACAACATTTTGTTGAATTCCAATTTCGAAGCACACGTGGCTGATTTCGGCCTCGCTAAGTTCTTGGTGGATGGAGGCATCGGTACATGTCTTCCATTGCAGGCTCCTATGGCTACATTGCACCTGACTCAGAGGCCAACCTGA 2001 0.4298 MAHTPFPCRKQLHWHHSHPNSTNLQFLNISDNQFSGDLDWDYSTMDNLQVVDAYNNNLTSLLPLGVLNLKRLRYLDLGNDIRGKIPGELGNLSNLREIYLGYYNSFEGGIPVEFGKLVNLVHMDLSSCDLDGPIPRELGNLKELDTLYLHINQLSGSIPKQLANLTNLVNLDLSSNALTGEIPFEFINLKKLKLFNLFLNRLHGSIPDYIADLPDLETLGLWMNNFTGEIPQNLGLSGKLQVLDLSSNKLTGFIPPHLCSSNQLRILILLNNFLFGPIPEGVGTCYSLTRVRLGQNYLNGSIPNGFLYLPKLNLAELQNNYLSGTLPENGNSSSQPVHLEQLDLSNNALSGPLPYSLSNFSSIQILLLSGNQFSGPIPPSIGGLNQVLKLDLSRNSLSGEIPPEIGYCVHLTYLDMSQNNLSGSIPPVISNIRILNYLNLSRNHLSQTIPRSIGSMKSLTVADFSFNEFSAIIKAKSFKKKGPGSWKMTAFKRWECDWKRRCWDCLPWKNAKWGRNCSEKASGFGANSHDHGFRAEIQTLGNIRHRNIVRLVAFCSNKETNLLVYEYMRNGSLGESLHGKKGAFLSWNLRYKISIDSAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFLVDGGIGTCLPLQAPMATLHLTQRPT 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00109 666 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515
Sebi124g00109 666 Pfam Leucine Rich Repeat 435 455 IPR001611 GO:0005515
Sebi124g00109 666 Pfam Leucine Rich Repeat 239 259 IPR001611 GO:0005515
Sebi124g00109 666 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 221 488 - -
Sebi124g00109 666 SMART serkin_6 464 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00109 666 Gene3D Ribonuclease Inhibitor 8 279 IPR032675 -
Sebi124g00109 666 Pfam Leucine Rich repeat 408 423 IPR001611 GO:0005515
Sebi124g00109 666 Pfam Protein tyrosine and serine/threonine kinase 528 641 IPR001245 GO:0004672|GO:0006468
Sebi124g00109 666 SUPERFAMILY Protein kinase-like (PK-like) 531 646 IPR011009 -
Sebi124g00109 666 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 105 210 - -
Sebi124g00109 666 SUPERFAMILY L domain-like 254 474 - -
Sebi124g00109 666 SUPERFAMILY L domain-like 18 327 - -
Sebi124g00109 666 Gene3D Transferase(Phosphotransferase) domain 1 509 654 - -
Sebi124g00109 666 ProSiteProfiles Protein kinase domain profile. 458 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00109 666 Gene3D Ribonuclease Inhibitor 379 483 IPR032675 -
Sebi124g00109 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Sebi124g00109 666 Gene3D Ribonuclease Inhibitor 280 378 IPR032675 -
Sebi124g00109 666 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 120 - -
Sebi124g00109 666 SMART LRR_typ_2 141 164 IPR003591 -
Sebi124g00109 666 SMART LRR_typ_2 238 261 IPR003591 -
Sebi124g00109 666 SMART LRR_typ_2 384 408 IPR003591 -
Sebi124g00109 666 SMART LRR_typ_2 165 189 IPR003591 -
Sebi124g00109 666 SMART LRR_typ_2 432 456 IPR003591 -
Sebi124g00109 666 SMART LRR_typ_2 213 237 IPR003591 -
Sebi124g00109 666 SMART LRR_typ_2 45 68 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00109 Sebi-Chr124 1267852 1271113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00109 22 650 Receptor kinase-like Gene Family AT5G65700 48.656 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi124g00109 PK_Tyr_Ser-Thr 3.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00109 - - pmum:103319018 938.717