Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00101 ATGGAGACTCACTTCAATCACAATCTCTTCGAGAGGCGTCCCTTCCTCAAGTCCAAGGCCCCTGCCGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCGACCGGCGGAAAGTGCATGCTCTTCAGATGGGTAACAGAGGATACCCTAAAGGCCTTGAGAGAAAAGGAAAAAGAGCCTTCAGCACCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCACTATGAGGGATGTGGAAAGTTTAAAGACAATATACACCAAATCTTGTTTGGTGGTGGACTCTATTGTTACTGTGAAGACATTCTTACCATTGCCATCATGGCCTTCTCCTTGGATTTCAACCTGAGGTCTCACATGAAGACGCATTCGCAAGAGAACTATCATATATGCCCATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCATATTGCTTCTCATCATGAAAAGAATGCATCTGTGGATGTGCCAAAGTATACTCCGCCTGCAGAGAAGCCAACAAAAACTACTAAACCTTCTGGGGGAACTTATGGTTCGGCATCATCTGATCGCCCCTATGCATGCCCTTATGAAGGGTGTGAAAAGGCGTACATTCATGAATACAAGCTCAAACTCCATCTGAAGAGGGAGCATCCTGGCCACGATGAAAATGCTGTGCATGCTATGGCTAATGCTGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGCGGGAAACGGTCAAATGGTAAAAGTCAGAAGCAAAGTAAGCCGAAGCCAAACTTGAAGTTGCCTCCTTCAAAAATTGCCCGAAAAGGGCCAGCTCCAACTCCTGCCACTTTAAATGTGATGAAAAAACCTGGCCAGTGA 978 0.453 METHFNHNLFERRPFLKSKAPAVKWVKEWVPQDVVATGGKCMLFRWVTEDTLKALREKEKEPSAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKFKDNIHQILFGGGLYCYCEDILTIAIMAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVPKYTPPAEKPTKTTKPSGGTYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHDENAVHAMANAVDNEMDEASDQDAYGGKRSNGKSQKQSKPKPNLKLPPSKIARKGPAPTPATLNVMKKPGQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00101 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 256 IPR013087 -
Sebi124g00101 325 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 143 291 - -
Sebi124g00101 325 ProSitePatterns Zinc finger C2H2 type domain signature. 228 251 IPR013087 -
Sebi124g00101 325 MobiDBLite consensus disorder prediction 206 220 - -
Sebi124g00101 325 Gene3D Classic Zinc Finger 199 269 - -
Sebi124g00101 325 SMART c2h2final6 77 101 IPR013087 -
Sebi124g00101 325 SMART c2h2final6 163 187 IPR013087 -
Sebi124g00101 325 SMART c2h2final6 226 251 IPR013087 -
Sebi124g00101 325 Gene3D Classic Zinc Finger 102 160 - -
Sebi124g00101 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Sebi124g00101 325 SUPERFAMILY beta-beta-alpha zinc fingers 143 189 IPR036236 -
Sebi124g00101 325 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Sebi124g00101 325 Gene3D Classic Zinc Finger 77 101 - -
Sebi124g00101 325 SUPERFAMILY beta-beta-alpha zinc fingers 221 249 IPR036236 -
Sebi124g00101 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 192 IPR013087 -
Sebi124g00101 325 ProSitePatterns Zinc finger C2H2 type domain signature. 165 188 IPR013087 -
Sebi124g00101 325 FunFam zinc finger transcription factor YY1 160 191 - -
Sebi124g00101 325 MobiDBLite consensus disorder prediction 190 223 - -
Sebi124g00101 325 MobiDBLite consensus disorder prediction 270 325 - -
Sebi124g00101 325 MobiDBLite consensus disorder prediction 281 296 - -
Sebi124g00101 325 FunFam Zinc finger transcription factor YY1 201 267 - -
Sebi124g00101 325 SUPERFAMILY beta-beta-alpha zinc fingers 78 102 IPR036236 -
Sebi124g00101 325 Gene3D Classic Zinc Finger 161 192 - -
Sebi124g00101 325 Pfam Zinc finger, C2H2 type 163 187 IPR013087 -
Sebi124g00101 325 FunFam zinc finger transcription factor YY1 77 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00101 Sebi-Chr124 1152953 1156124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00101 8 325 C2H2 Transcription Factor Family AT4G06634 61.976 2.55e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi124g00101 zf-C2H2 0.0075 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00101 - - zju:107412546 476.863