Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00100 ATGGTCACTTGCCTTGTGGCGGGGATAAAGAAGTACCCTAGCAAGGTCATCAAGAAGGACTCTGCTAAGAAGACAGCCAAGAAATCGAGGGTCAAGGCTTTCGTCAAGTTGGACGCCGTTGCCCCTGATGTCCTCCACTCCAAGGACAAGAAGGTCGCTGCCCTCAAAGAAACCAAGAAGCGCTTTGAGGACAGGTTTAAGACCGGCAAGAACAGGTGGTTCTTCACCAAACTTCGATTCTAA 243 0.5021 MVTCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLDAVAPDVLHSKDKKVAALKETKKRFEDRFKTGKNRWFFTKLRF 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00100 80 PANTHER 60S RIBOSOMAL PROTEIN L27 3 37 IPR001141 GO:0003735|GO:0005840|GO:0006412
Sebi124g00100 80 Gene3D - 38 80 IPR038655 -
Sebi124g00100 80 Gene3D - 1 37 IPR038655 -
Sebi124g00100 80 Pfam Ribosomal L27e protein family 39 80 IPR001141 GO:0003735|GO:0005840|GO:0006412
Sebi124g00100 80 ProSitePatterns Ribosomal protein L27e signature. 69 80 IPR018262 GO:0003735|GO:0005840|GO:0006412
Sebi124g00100 80 Coils Coil 45 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00100 Sebi-Chr124 1150583 1150880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00100 4 80 Cytoplasmic Ribosomal Protein Gene Family AT2G32220 63.158 3.37e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00100 K02901 - gmx:100817943 121.709