Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00086 ATGGAGAGCAATTTCTGTGCATATAATCCTCAGCTAGCATCTAGCTTGAAGAAGAGTTACAAGAAGCACCAGCATGATCACTCAGAGCAGCATCATCATCTTAAAGAAGATGATGATATGTCTTTATCTTTCAATCTGAGGAATGTTTCAAAGCTCATTCTTCCTCCACTAGGTGTTTCTAAGCAGAATCCTGTAAACTCAAAAGGATGGATCATATCCCCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTCATGGTTCTTCTGGTAGCTTACTCTGCATGGGTGTTTCCCTTTGAAGTTGCTTTCATGCACTCTTCTCCAAACAGGAAAATCTATATTGTGGACAATGTTGTTGATTTTTTCTTTGCTGTTGATATTGTTTTGACATTCTTCGTGGCTTATATTGATCCAACAACTCATCTACTAGTTCGAGATTCCAAAAAGATTGTAATAAGGTACTTGTCAACATGGTTCCTGATGGATTTGGCATCAACTATACCATATGAAGCAATAGGGTATTTGTTCACTGTTCATTGTGCTGGATGCCTCTATTACATGCTAGCTGATCGCTACCCTCACCAAGGAAAGACATGGATTGGAGCTGTGATCCCAAACTTCAGAGAGACAAGCCTTAGGATCAGATACATTTCAGCCATCTACTGGTCCATCACCACCATGACCACTGTAGGTTATGGTGACCTCCATGCTGTGAACACCATGGAAATGATCTTCATTATTTTCTACATGCTTTTCAACCTTGGCCTAACTGCTTACTTGATTGGCAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACCATGGAATTTAGAAATAGCATTGAAGCGGCATCAAACTTTGTGTGCCGCAATCGATTACCTCCAAGGTTAAGAGAGCAGATCCTGGCTTATATGTGTTTAAGATTTAAGGCAGAGAGCTTGAATCAGCATCAACTTATTGAACAGCTACCAAAGTCAATCTGCAAAAGCATCTGCCAGCATTTGTTTTATCCAACTGCAGAGAAAGTGTATCTCTTCAAAGGAGTCTCAAAAGAAATTCTTCTGTCCCTTGTTGCAAAAATGAAGGCAGAATACATACCACCTAGAGAGGATGTTATCATGCAAAATGAAGCGCCAGATGATGTTTACATTATAGTGTCCGGAGAAGTGGAGATCATAGATAGTGTAATGGAGAGAGAGAGGATTTTAGGGACTCTACATACAGGGGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGACCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAGCTCTTGAGGCTCAAAACCAACACTCTTATAGAAGCCATGCAAGTAAAAAAAGAAGACAACATACAAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATTTGAGTATCAGGGATTTGATGGTGGAGAATATGGAAGAAGAGGACCCTAACATGGCTGTGAACCTGTTAACGGTGGCCAGCACTGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGGGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGAAAAACCCCCTTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCTTACTCAAGTACACATGCAACATACATATAAGAGACATCAATGGTGACACTGCATTATGGGATGCAATAGCATCAAAACACTACTCCATATTCCGGATCCTCTACCAACTAGCTGCACTCTCTGATCCACACACAGCAGGAATTCTCCTATGTACAGCAGCAAAAAGAAATGATTTAACAGTAATGAATGAGCTTTTAAAGCAAGGATTAGACATTGACTCTAAAGATCGCCATGGAATAACAGCAATCCAAACTGCCATGGAAGAAAATCATGTGGACATGGTTCAGTTGCTTGTCATGAATGGAGCAGATGTATCTGATGTACATACTCATGAATTTTCTACATCCACCTTAAATGAAATGCTGCAGAAGCGTGAAATTGGGCATCTAATAACTGTAAAAGAGGTCATTCCCGGTGAGGTTGCATTAAGGGGGAGAAATCAAGAAGAGCAGGAGAAAATTCAGGGAAAATCTAATGGACAAATGTGTCCAAGAGTAAGCATATATAGAGGTCACCCTGCAATGAGAAGAGAAAAAGGTATCATGGAAGCTGGCAGGCTAATAAAGTTGCCTGATTCATTAGAGGAGCTCAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAGAGATGCAATGGTGACAAATGAAGAAGGATCAGAAATAGACTGTATTGATGTGATCAGAGATAATGATAAACTATTTTTTGTTGAATAG 2337 0.4044 MESNFCAYNPQLASSLKKSYKKHQHDHSEQHHHLKEDDDMSLSFNLRNVSKLILPPLGVSKQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVFPFEVAFMHSSPNRKIYIVDNVVDFFFAVDIVLTFFVAYIDPTTHLLVRDSKKIVIRYLSTWFLMDLASTIPYEAIGYLFTVHCAGCLYYMLADRYPHQGKTWIGAVIPNFRETSLRIRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLREQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFYPTAEKVYLFKGVSKEILLSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDSVMERERILGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLIEAMQVKKEDNIQILKNFLQHFKQLKDLSIRDLMVENMEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKYTCNIHIRDINGDTALWDAIASKHYSIFRILYQLAALSDPHTAGILLCTAAKRNDLTVMNELLKQGLDIDSKDRHGITAIQTAMEENHVDMVQLLVMNGADVSDVHTHEFSTSTLNEMLQKREIGHLITVKEVIPGEVALRGRNQEEQEKIQGKSNGQMCPRVSIYRGHPAMRREKGIMEAGRLIKLPDSLEELKTIAGEKFGFDARDAMVTNEEGSEIDCIDVIRDNDKLFFVE 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00086 778 PRINTS Ankyrin repeat signature 522 537 IPR002110 GO:0005515
Sebi124g00086 778 PRINTS Ankyrin repeat signature 634 648 IPR002110 GO:0005515
Sebi124g00086 778 CDD CAP_ED 346 459 IPR000595 -
Sebi124g00086 778 ProSiteProfiles Ankyrin repeat region circular profile. 618 646 - -
Sebi124g00086 778 SMART ANK_2a 488 517 IPR002110 GO:0005515
Sebi124g00086 778 SMART ANK_2a 521 550 IPR002110 GO:0005515
Sebi124g00086 778 SMART ANK_2a 588 614 IPR002110 GO:0005515
Sebi124g00086 778 SMART ANK_2a 618 647 IPR002110 GO:0005515
Sebi124g00086 778 SMART ANK_2a 554 585 IPR002110 GO:0005515
Sebi124g00086 778 Gene3D - 171 269 - -
Sebi124g00086 778 SUPERFAMILY Ankyrin repeat 453 648 IPR036770 -
Sebi124g00086 778 SMART cnmp_10 346 463 IPR000595 -
Sebi124g00086 778 FunFam Potassium channel KAT2 334 470 - -
Sebi124g00086 778 Pfam Ankyrin repeats (3 copies) 497 576 IPR002110 GO:0005515
Sebi124g00086 778 ProSiteProfiles Ankyrin repeat region circular profile. 521 552 - -
Sebi124g00086 778 PANTHER POTASSIUM CHANNEL AKT1 175 777 IPR045319 GO:0005249|GO:0006813
Sebi124g00086 778 ProSiteProfiles cAMP/cGMP binding motif profile. 346 465 IPR000595 -
Sebi124g00086 778 ProSiteProfiles KHA domain profile. 705 778 IPR021789 -
Sebi124g00086 778 SUPERFAMILY Voltage-gated potassium channels 74 269 - -
Sebi124g00086 778 ProSiteProfiles Ankyrin repeat profile. 618 650 IPR002110 GO:0005515
Sebi124g00086 778 Pfam Ion transport protein 80 169 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi124g00086 778 SUPERFAMILY cAMP-binding domain-like 273 465 IPR018490 -
Sebi124g00086 778 Gene3D Jelly Rolls 313 488 IPR014710 -
Sebi124g00086 778 Gene3D - 490 671 IPR036770 -
Sebi124g00086 778 Pfam KHA, dimerisation domain of potassium ion channel 704 776 IPR021789 -
Sebi124g00086 778 Pfam Cyclic nucleotide-binding domain 366 449 IPR000595 -
Sebi124g00086 778 ProSiteProfiles Ankyrin repeat profile. 521 553 IPR002110 GO:0005515
Sebi124g00086 778 Pfam Ion channel 175 268 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00086 Sebi-Chr124 970938 976060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00086 1 526 Ion Channels AT4G22200 66.382 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00086 K21867 - gmx:100798422 1296.95