Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00079 ATGGATTCTGGAAAGTCCAACCAAGCACGTGACTTCGACTTGAACATTCCATTTAGGGAAGATTTGGATTTGGAAGCCGAAAACCAGCTCATTCACATCAACACTCCACCGGCTTCTCAAATTAGCACTGATGACATAAACATAACTGCTGCAAAGAATGAAAATGAAGTTCATGAATCTTCTGCTGTGGAGGACACAACTCCAGCTCTTGCAAATCCTGATGATACGAAGCAGGTTCGCTTGTATGTTTCCTCTCTTCCTGGAACCGGAGGAGGATTCATACCTGGGGGACGCCGCCGCTACCACCGCCGTGGAGCAGCAGTTCTGACAAGTGATCCAGATAGATTCTGCACAAATTATTATTGCAAGACAAGAAAAACTCCATTGTGGCGCAAGGGACCTCTGGGACCAAAGACTTTGTGCAATGCATGTGGCATTTATTACGTTAAGCATGTGAAGAGCAGGGGCAGTGGCATCCCTCAAGTGCCAATTGAAGAAGGTGATGCTTCTTCCTCCAGTGCTGCCAATGATGGTGCAGGTGCTCCTCCAACTTCTGTCCCAGCTGCAACTGATCCAAATGGGTCTTCAAATTTCTAA 597 0.469 MDSGKSNQARDFDLNIPFREDLDLEAENQLIHINTPPASQISTDDINITAAKNENEVHESSAVEDTTPALANPDDTKQVRLYVSSLPGTGGGFIPGGRRRYHRRGAAVLTSDPDRFCTNYYCKTRKTPLWRKGPLGPKTLCNACGIYYVKHVKSRGSGIPQVPIEEGDASSSSAANDGAGAPPTSVPAATDPNGSSNF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00079 198 ProSiteProfiles GATA-type zinc finger domain profile. 122 155 IPR000679 GO:0006355|GO:0043565
Sebi124g00079 198 Pfam GATA zinc finger 122 151 IPR000679 GO:0006355|GO:0043565
Sebi124g00079 198 MobiDBLite consensus disorder prediction 159 198 - -
Sebi124g00079 198 PANTHER OS01G0976800 PROTEIN 53 161 - -
Sebi124g00079 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 161 - -
Sebi124g00079 198 CDD ZnF_GATA 116 160 IPR000679 GO:0006355|GO:0043565
Sebi124g00079 198 SMART GATA_3 111 164 IPR000679 GO:0006355|GO:0043565
Sebi124g00079 198 Gene3D - 110 166 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00079 Sebi-Chr124 878701 879841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00079 117 151 C2C2-Gata Transcription Factor Family AT3G20750 62.857 2.74e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi124g00079 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00079 - - gmx:102663335 141.739