Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00078 ATGGACCTCAATTATGTGCTGAGAATCCCATGGAATTCTTCTGCTTGTGAAAATTTCCACTCTTTGGCATCCAAAAAAGAGGCAAACACAACCACTTGTTGCATAACACTTCTGTCCCTCTTTGGCATAGGACTTGCACAGCACCTGAAAGAGACCTCTCGTTTTCAGCTCCCAAACCTTCCCACCTCCAATTCATGCCTTGAAGACTTCCAATCCAAGCTCACTTCCCTCTCACTCCCCAACAATATCGTCAACTCCTGCTTTGATCCACTTCAGTTTGTTATCTCTCCCAATATATGTGCAGGAATTGAAACCATCCCAGATTGGACCAACAAGCTTGGTCAGAGCACACCACTCAACACTGCTTGTAGAGCAGATCTCACTGATCTTTCCCTCTGTGATGTGTGCCTGGCGGCGGGCTTACAGGTGAAACAGAAGCTTGTTTCCATTGATGGTAATGCTTCCCATTCCTTGGATTGCTTTTACTTTGCCATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTCACTTGCATCTTTAGTCTACCTGTTCATTCACAAGTGGGTTCTGGGTCAAAGGGTCATCAGGCCCTTGTGTTTGGGTTGACAGGAGCTGGAGTTGCATTGCTTGTCATGTCTTCTTTGTTGGCACTGTATGTCTGGTATGACAGGAAGCGTAAGAAGAGAAAGCTTGAGTCTTTCCAATTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGGAGATTGAGACCCAATACAGGGTCGATTTGGTTCAAAATTGGGGAACTTGAGAAGGCTACTGATAATTTTTCACCTAAGAACTTCATAGGGCGAGGTGGGTTTGGGTTGGTTTTCAAGGGAACCTTGCCTGATGGGACAGTGGTTGCTGTGAAAAGGATTTTAGACTCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTGGAAATTATTAGCAATCTGAAGCACCGTAATCTGGTGCCACTCAGAGGCTGTTGTGTGGAAGATGAGAGATCTCCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAATCTGGGAAAATAGAAGAGGCTTTGGATGCTTCCCTTTTGAAAGATGAAAACTGTCCTAGTTCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTGGTAGGAATTTTATGTTCTCATGTAATGGTTGCTCTGAGGCCAACAATTGCTGATGCATTGAAGATGTTGGAAGGTGATATTGAGGTTCCTCAAATTCCAGATAGGCCTATGCCTCTTGGGCATCCTTCATTTTATAATAATACCGATGGGAACACTTTTAGCATATCCCCAGCATTAAGTGGCCCCAAATTGCAAACTGGAGACATGCTCAGGTCTACACTTCATTTGAGGCCAACAATGTCCCTCAATATCTCAAGACTGAAGCTAGCAATGACAATAAATCTTATTGTGCCTGAAGAAATTCTGTGCAGTGTTGTAATGCCAACCTTGAAGAAACTTAGCAGTTAG 1527 0.4381 MDLNYVLRIPWNSSACENFHSLASKKEANTTTCCITLLSLFGIGLAQHLKETSRFQLPNLPTSNSCLEDFQSKLTSLSLPNNIVNSCFDPLQFVISPNICAGIETIPDWTNKLGQSTPLNTACRADLTDLSLCDVCLAAGLQVKQKLVSIDGNASHSLDCFYFAILYAAGIVNEFGPESNGAVTCIFSLPVHSQVGSGSKGHQALVFGLTGAGVALLVMSSLLALYVWYDRKRKKRKLESFQFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDNFSPKNFIGRGGFGLVFKGTLPDGTVVAVKRILDSDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVEDERSPRAFLITDWAWSLVKSGKIEEALDASLLKDENCPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSFYNNTDGNTFSISPALSGPKLQTGDMLRSTLHLRPTMSLNISRLKLAMTINLIVPEEILCSVVMPTLKKLSS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00078 508 SUPERFAMILY Protein kinase-like (PK-like) 257 344 IPR011009 -
Sebi124g00078 508 SMART tyrkin_6 277 480 IPR020635 GO:0004713|GO:0006468
Sebi124g00078 508 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Sebi124g00078 508 Gene3D Phosphorylase Kinase; domain 1 247 354 - -
Sebi124g00078 508 ProSiteProfiles Protein kinase domain profile. 277 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi124g00078 508 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 353 438 - -
Sebi124g00078 508 FunFam Receptor-like serine/threonine-protein kinase At4g25390 245 355 - -
Sebi124g00078 508 Pfam Protein tyrosine and serine/threonine kinase 281 372 IPR001245 GO:0004672|GO:0006468
Sebi124g00078 508 Pfam SPARK 1 161 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00078 Sebi-Chr124 864619 866676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00078 346 464 Receptor kinase-like Gene Family AT1G11050 73.109 1.86e-50 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Sebi124g00078 PK_Tyr_Ser-Thr 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00078 - - gmx:100806560 591.267