Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00072 ATGGGAAGAAGAAACTCATCGCTGCAACAAACCCTTCGTCGTCGAGTGGAGGCCATGTGCCCTACCGCCGACGAAATTGTCAATAATCTTCGTTCAACCTACTCTGATTACCAGCGAACCAAGCAGCAAACTCTGAAACGATTTGTTCAAGAAGCTCTTCAATCCACACGGAACCATGGCGATGAGGATGAGGATCGAAATCCCTCTCGAAAGAGACGGAAGGAAATTGACGAAGGTGATAAAGAGAGATTGCAAAATATGGAAGCGAGTATGCAAGTCCCATCGACCCCATCTTATTCAACCTCGGAGAGTGGCGAAGAAGACGGAACTGCGTCGGTGTCGTCAGTGGAACCTTGTCTTGACTTGATGAAGACAATGCTGCGGAATTCGTATACTGCAACTAAGGTTGTGGTGGAGGGAAAGAATGTTGAAATGGAGGTGAGCAATAGTGGTAAGGCCATTAACACTGTTAATGAAGGTGAAGCCAAGTCGGCGGGGAGGCAATTGAAGGGTTCTGTCTCAAACGGCGGTGGTGATGATGATGTTGAGGTGAAGGGGAAGGATGGGCCAAGGTTTAGGTATTTGGGTGGGATGAAAGAGGTTTTGGAGGAAGTGAAGAGGGAGGTGATTCTGCCGTTCTATCATCCCCACGTGCCTAGAGATTTAAAACCCTCTGGCATTTTGTTGCATGGACCTTCTGGCTGTGGGAAGACTATATTGGCTCGTGCTATTGCTAATGAGACTGGTCTTCCTTTCTATCAAATGGAGTCAGGTGCATTGGAAGAAAATATTAGACAGATTTTCTATAAAGCATATAGGACCACCCCATCAATTGTCTTTATTGATGAGATTGATGCAGTTGCTTCAAAAAGAGAGAATTTACAGAGGGATCGAATTGTTACAAAGTTAATTACTTGCATGGATCAACCACCTGATGATTTAGAGGGTCCTTCTGGCTCCATTCTTGTAATTGGAGCTACAAGTAGGCCAGATGCTATTGACCCTGCCCTTAGAAGGCGGTTTGATCGTGAGATTATTATTGGCATTCCTGATGAATCTGCTAGGGAAGATATCCTTTCCAAGCTTATTACTCGCAATAATCTTAAATTCGAGGGTCCGATTGATCTACAAAAAATAGCCAGGGCTACACCAGGATTTGTTGGTGCTGATTTGGTAGCTCTGACTAAGCAGGCTAGTAATCTGGCAATGAATAAAATAGTTGATGAAAGGTATGTCACGAGTGAGCCTCCTGAAGATTGGTGTATAGAACCTTGGTTGACAGAAGAAGTGGATAAGCATGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAAAGGGTGCAACCATCAACCAAAAGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGAAGATGTTGGTGGACTTGATCACTTAAGACAGGAGTTTGAAGACTATATTATAAGGCGTATAAAATATCCTGAGGATTATGAGAGATTTGGGGTGAAATCAGAGGCAGGAATTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCTAAAGCTGTTGCCAATGCGGCAGGAGCTAATTTCAGACATATTAAGGGACCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAGCTGGAAGTTCGGAAATTGTTTAGCCATGCAAGGACGTGTGCACCTTGTATACTTTTTTTTGATGAGGTGGATGCTTTGGCAACCAAACGTGGTAAAGAAGGTGGATGGGTTACTGAACGACTATTGAACCAGTTGCTTATCGAGTTAGATGGCGCAGAGCAGCGGAGAGGTGTTTTTGTGATTGGTGCAACAAATAGGCCTGAGGTGATGGATCCTGCTCTTTTACGGCCTGGTAGATTAGGAAAACTTCTTTACGTTCCTCTCCCAAGCCCAGACGAGCGAGTTTTAATATTGAAAGCTCTTGCAAGGACGATACCTGTTGATGCTAGTGTGGATTTGAACGCCATAGGAACATCCGAAGCTTGTGACAACCTGAGTGGCGCTGATCTTGCTGCATTGATGAATGAAGCAGCACTGGCTGCTATTAGAGAGAGGAGGGCCTCAACTGATACAACTCGTGATACATTGAACACAGTCAAGACACATCATATTCACGAAGCACTGAGTAAAGTCTTTCCCTCTGTGTCAGACATGCAAAAGCAGTACTACCAGCATTTGTCAGAGAGGTTTAACCCTGCTTTCCGCAGAAGTGTAAAAGAAAGAAGTGAGAAAGAAACGGGGGGAAATCAATCGTTTGGGGGAGAGTGGAAGAGGGGGAGAAAGGAGAAAAAGCGGTGTGGGACCCAGCAACAAATTTTCTCATCACCGGAAGCGAGGAAAAGGAAACTGGGAAGAAGACAACCATGA 2379 0.4443 MGRRNSSLQQTLRRRVEAMCPTADEIVNNLRSTYSDYQRTKQQTLKRFVQEALQSTRNHGDEDEDRNPSRKRRKEIDEGDKERLQNMEASMQVPSTPSYSTSESGEEDGTASVSSVEPCLDLMKTMLRNSYTATKVVVEGKNVEMEVSNSGKAINTVNEGEAKSAGRQLKGSVSNGGGDDDVEVKGKDGPRFRYLGGMKEVLEEVKREVILPFYHPHVPRDLKPSGILLHGPSGCGKTILARAIANETGLPFYQMESGALEENIRQIFYKAYRTTPSIVFIDEIDAVASKRENLQRDRIVTKLITCMDQPPDDLEGPSGSILVIGATSRPDAIDPALRRRFDREIIIGIPDESAREDILSKLITRNNLKFEGPIDLQKIARATPGFVGADLVALTKQASNLAMNKIVDERYVTSEPPEDWCIEPWLTEEVDKHAIKMSDFEEAVKRVQPSTKREGFSSIPNVKWEDVGGLDHLRQEFEDYIIRRIKYPEDYERFGVKSEAGILLYGPPGCGKTLIAKAVANAAGANFRHIKGPELLNKYVGESELEVRKLFSHARTCAPCILFFDEVDALATKRGKEGGWVTERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDPALLRPGRLGKLLYVPLPSPDERVLILKALARTIPVDASVDLNAIGTSEACDNLSGADLAALMNEAALAAIRERRASTDTTRDTLNTVKTHHIHEALSKVFPSVSDMQKQYYQHLSERFNPAFRRSVKERSEKETGGNQSFGGEWKRGRKEKKRCGTQQQIFSSPEARKRKLGRRQP 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00072 792 MobiDBLite consensus disorder prediction 88 111 - -
Sebi124g00072 792 MobiDBLite consensus disorder prediction 54 115 - -
Sebi124g00072 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 732 IPR027417 -
Sebi124g00072 792 SMART AAA_5 498 634 IPR003593 GO:0016887
Sebi124g00072 792 SMART AAA_5 223 351 IPR003593 GO:0016887
Sebi124g00072 792 FunFam ATPase, AAA family protein 460 638 - -
Sebi124g00072 792 ProSitePatterns AAA-protein family signature. 602 620 IPR003960 GO:0005524|GO:0016887
Sebi124g00072 792 ProSitePatterns AAA-protein family signature. 321 340 IPR003960 GO:0005524|GO:0016887
Sebi124g00072 792 Gene3D - 460 727 IPR027417 -
Sebi124g00072 792 Gene3D - 192 451 IPR027417 -
Sebi124g00072 792 MobiDBLite consensus disorder prediction 56 85 - -
Sebi124g00072 792 MobiDBLite consensus disorder prediction 742 792 - -
Sebi124g00072 792 Pfam AAA+ lid domain 374 414 IPR041569 -
Sebi124g00072 792 Pfam AAA+ lid domain 654 697 IPR041569 -
Sebi124g00072 792 Pfam ATPase family associated with various cellular activities (AAA) 502 631 IPR003959 GO:0005524|GO:0016887
Sebi124g00072 792 Pfam ATPase family associated with various cellular activities (AAA) 227 347 IPR003959 GO:0005524|GO:0016887
Sebi124g00072 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 455 IPR027417 -
Sebi124g00072 792 MobiDBLite consensus disorder prediction 160 187 - -
Sebi124g00072 792 PANTHER AAA-FAMILY ATPASE 85 735 - -
Sebi124g00072 792 Gene3D - 350 447 - -
Sebi124g00072 792 Gene3D - 633 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00072 Sebi-Chr124 805295 809973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00072 222 755 Calmodulin-binding Proteins AT3G56690 35.140 7.83e-98 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00072 K14571 - gmx:100809594 895.575