Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00060 ATGTCTCTGCCAGGACGTCCTCGTATTGTAGTAAATGGGGTTCGAAGAACAAGAACCTTCCACTATTTCTGGTGTCTAAATTGCCAACGTACAGTGAGAATACCCTCTACAAATAGAGATGCCTCTTCTTCATGTCCCTATTGCTTCCATCAATTGCATTATGAGCTTGATATCTCAAGGCCAAGACTTCTCATGAACGTTCCTAATAACTTGGAACCTTCCCCTTCTACTCAGCTAATACATAGCTTGGCCCTCATGCTTGATCCATCTCTGAGAAGACAAAACAACCATTTGAACACAAGAACACAATGGGAAACAGAACATGAAGATAATAGTACAACTACAAATCCACAAGGTTGGATTACCCTCCGATTTGTTCCACCCACAAGGCCTATTTCCCCACCACAAAACTTTGTTCCTAATGCCACCCCTTTTGAGAATACACTAGATGATTTCATTGATGGGATGATTCAGAATAATAATAATAATAGACCAGGGCCACCTCCAGCATCATCTTCAGCCATTGCAGCCTTGCCAATGGTGAAAGTGACACAAGCACATTTGGCAAGTGACCCCAATTGTCCAATATGCAAAGATGAGTTTCAGCTTGATATGGAAGTGAGAGAGTTGCCATGCAAGCATTTCTATCATTCTGATTGCGTTGTGCCTTGGCTGTGCATGCATAATACTTGTCCTGTTTGCCGCTATGAGCTACAAAGTGCTGCTAATGCTAATGCTAATTACCTTTTCCAAAATGAGAATTATGAGCAAAGGTTTGGTTTTGAGGATGTTACAAGCAGCTTGAACTGGATTTGGAGCCAAGTAGCTTCCTTCAGGCCTATCCGTGCAGTCCTAGATTGGACACAGTCCTACTTTGATTTCCACGAAAATCGTGATAGTGGTGGTCGCAGAGGTAAAATCAAACTCCAATGCTGCTTCTGA 942 0.4246 MSLPGRPRIVVNGVRRTRTFHYFWCLNCQRTVRIPSTNRDASSSCPYCFHQLHYELDISRPRLLMNVPNNLEPSPSTQLIHSLALMLDPSLRRQNNHLNTRTQWETEHEDNSTTTNPQGWITLRFVPPTRPISPPQNFVPNATPFENTLDDFIDGMIQNNNNNRPGPPPASSSAIAALPMVKVTQAHLASDPNCPICKDEFQLDMEVRELPCKHFYHSDCVVPWLCMHNTCPVCRYELQSAANANANYLFQNENYEQRFGFEDVTSSLNWIWSQVASFRPIRAVLDWTQSYFDFHENRDSGGRRGKIKLQCCF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00060 313 SMART ring_2 194 234 IPR001841 -
Sebi124g00060 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 106 238 - -
Sebi124g00060 313 SUPERFAMILY RING/U-box 174 241 - -
Sebi124g00060 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 241 IPR013083 -
Sebi124g00060 313 FunFam E3 ubiquitin-protein ligase RING1-like 156 241 - -
Sebi124g00060 313 Pfam Ring finger domain 193 235 IPR001841 -
Sebi124g00060 313 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00060 Sebi-Chr124 679748 680689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00060 1 294 C3H Transcription Factor Family AT1G68180 32.095 5.26e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00060 K11982 - gmx:100793656 404.445