Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi124g00045 ATGGGTTCAGAGGATAAAGATCATCCTGAAGAAAATAATGAGAAGAAAATGGCATGGCAACCCAAAGTGGCTCAAAAACTGCACCAATTATCCGATTTCGTTGTCTTGGATGAAGCAGATCAAGTCCTGGATGTTGATTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCAGAAAATCGGCAAAACCTGTTCTTTTCCGCAACAACAACAAATAATCTGCAAAAGTTGCGTGAACGTTACCAGGATAAGCTGTATGTCTACGAGGCATATGAAGGCTTGAAAACAGTTGAAACCCTTAAGCAACAAGTTATATTTATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCTAAAATGGAAGAAATGGGCATTCGGTCTGCCATTGTATTTACCAACACACGCAGAGACTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATACAAAACACAGGTTCAGAGGCTCGAGGCACTCAATCAATTTAAATCAGGAAAGGTTTCTGTACTACTTACAACTGATGTTGCCTGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGCATTCCACGAAATTATATTCATCGTGTAGGTCGTACTGCAAGAGCGGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTCATTCATGAAATAGAGACTCTTATTAAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAGATGATGGATGACGGGTTTGAGGAGAAAGAAAACAAGCGGAAAAAGCAAAAACTGGAAATGCTAGCTGAGAAAGGGTTGTTAAAGAAAAGAAGTAAAAAGAAAAAAGAAATAAAGATTTTGCAGAGAAAGGAAAACAACAGAAAAAAGAGGAAGTGGGAGCATTTGAAGATACGGCATCACAAAAGAAAAGGAGTAAGAAGAGAGTGTAACTCAGTATATTTGAGGAATTAA 1068 0.3792 MGSEDKDHPEENNEKKMAWQPKVAQKLHQLSDFVVLDEADQVLDVDFQEELKFIFQCLPENRQNLFFSATTTNNLQKLRERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKDVYLMHILSKMEEMGIRSAIVFTNTRRDCHRLSLMLEVLDQEAAALYSYKTQVQRLEALNQFKSGKVSVLLTTDVACRGLDIPTVDLVINYDVPSIPRNYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIETLIKRQLEMIEYKENEVLSLMKKVFSAKNVAEMKMMDDGFEEKENKRKKQKLEMLAEKGLLKKRSKKKKEIKILQRKENNRKKRKWEHLKIRHHKRKGVRRECNSVYLRN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi124g00045 355 Gene3D - 15 86 IPR027417 -
Sebi124g00045 355 SMART helicmild6 143 224 IPR001650 -
Sebi124g00045 355 Pfam Helicase conserved C-terminal domain 117 224 IPR001650 -
Sebi124g00045 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 239 IPR027417 -
Sebi124g00045 355 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 32 341 - -
Sebi124g00045 355 Pfam DEAD/DEAH box helicase 27 78 IPR011545 GO:0003676|GO:0005524
Sebi124g00045 355 CDD SF2_C_DEAD 101 233 - -
Sebi124g00045 355 Gene3D - 87 263 IPR027417 -
Sebi124g00045 355 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 89 IPR014001 -
Sebi124g00045 355 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 116 263 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi124g00045 Sebi-Chr124 553934 557634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi124g00045 35 237 Eukaryotic Initiation Factors Gene Family AT3G13920 34.483 1.65e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi124g00045 K14778 - gmx:100798597 456.832