LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi124g00012	ATGGCGAATGTTGATTGTGATGCCTTGAATGCATTGAAGAGCAACTTGCAAGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCCTGCACATGGTTTCATGTTACATGCAATGGTGATAACAGCGTGACTCGAGTTGATCTTGGAAATGCAGACCTTTCTGGTACACTGGTTCCACAACTTGGTCAGCTCACAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATCCCAGACGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCGAATACATTGGGCAACCTTGGAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGTCTGGAGGAATTCCTTGGTCTTTGACAAAGGTTGCTTCACTGCAAGTTCTTGATCTCTCAAACAACCATCTATCAGGGGATGTCCCAGTAAATGGTTCATTTTCATTATTTACCCCCATCAGTTATCAAAACAATCCAGGCTTGAAACAACCAAACACTACTCGAACGACACCACTTTCTCCACCGTCATCAGGTTCTTCAGGATCTGCCTCTATCCTTTACCTACCAATATTTCATTTACCTCTTCCCCCAAAGCATAAGGAGAAAAGAGGTAGCAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCCGGTGCTGCTCTGCTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGCCAGCTTAAAAGGTTTTCTCTACGTGAGCTGCAAGTTGCAACCGATAATTTCAGTAACAAACATATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACACAAGGTGGGGAGCTGCAATTTCAAACAGAGGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTACTCCGGCTTCGTGGTTTTTGCATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTAGCATCATGTTTACGAGAACGTCAAGAATCTCAACCACCACTTGACTGGCCAATACGGAAACGTATTGCTCTGGGATCTGCCAGGGGACTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTACAAAGATACTCATGTTACTACTGCTGTACGTGGTACCATTGGGCACATAGCACCAGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTTATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTAGCGCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTGAAAGACAAGAAGTTGGAAACACTGGTAGATGCAGATTTACAGGGCAATTATAATGATGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGGTCTCCTATGGAAAGACCCAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAAAAATGGGAGCAATGGCAGAAAGAGGAGATGTTCCGGCAAGATTTTAACAACAACATGCATCACCCTAATGCAAATTGGATACTAGACTCAACTTCACATATCCAGGCAGATGAGCTATCAGGTCCTAGATGA	1842	0.4283	MANVDCDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGTLVPQLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNNLTGPIPNTLGNLGKLRFLRLNNNTLSGGIPWSLTKVASLQVLDLSNNHLSGDVPVNGSFSLFTPISYQNNPGLKQPNTTRTTPLSPPSSGSSGSASILYLPIFHLPLPPKHKEKRGSSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERQESQPPLDWPIRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNNNMHHPNANWILDSTSHIQADELSGPR	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi124g00012	613	Gene3D	Ribonuclease Inhibitor	2	187	IPR032675	-
	Sebi124g00012	613	Pfam	Leucine Rich Repeat	70	92	IPR001611	GO:0005515
	Sebi124g00012	613	FunFam	Somatic embryogenesis receptor kinase 1	1	188	-	-
	Sebi124g00012	613	Pfam	Leucine rich repeat N-terminal domain	3	42	IPR013210	-
	Sebi124g00012	613	Pfam	Protein kinase domain	290	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi124g00012	613	SMART	serkin_6	289	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi124g00012	613	FunFam	Somatic embryogenesis receptor-like kinase 1	366	583	-	-
	Sebi124g00012	613	SUPERFAMILY	L domain-like	5	169	-	-
	Sebi124g00012	613	CDD	STK_BAK1_like	295	566	-	-
	Sebi124g00012	613	FunFam	Somatic embryogenesis receptor kinase 1	258	365	-	-
	Sebi124g00012	613	Gene3D	Phosphorylase Kinase; domain 1	258	365	-	-
	Sebi124g00012	613	ProSiteProfiles	Protein kinase domain profile.	289	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi124g00012	613	ProSitePatterns	Protein kinases ATP-binding region signature.	295	317	IPR017441	GO:0005524
	Sebi124g00012	613	SUPERFAMILY	Protein kinase-like (PK-like)	268	564	IPR011009	-
	Sebi124g00012	613	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	4	574	-	-
	Sebi124g00012	613	Gene3D	Transferase(Phosphotransferase) domain 1	366	583	-	-
	Sebi124g00012	613	MobiDBLite	consensus disorder prediction	174	197	-	-
	Sebi124g00012	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	412	424	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi124g00012	Sebi-Chr124	90038	95078	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi124g00012	2	613	Receptor kinase-like Gene Family	AT4G33430	76.248	0.0	949

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Sebi124g00012		Pkinase	4e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi124g00012	K13418		K13416	gmx:100800522	1049.65