Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00105 ATGGCCTCTAAAACTGAAAGCGAGAATTCAACCGAAACTACTCCATCATCGCCAAAGAATATATACAAAGATCCAGATGATGGGCGGCAACGGTTTTTGCTTGAATTGGAATTTGTGCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAATCGATATTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATATATTAAATTTATCATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTAGCAATAAGGAACTAGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTACCAAGATCACTTCCTGAACCTAGTGCACCCCCTGCACCCCCTGCTCCTACTTCAACTGACAGCATCATCTACTCAAGCTCCTTCACCAATGCCATATGCTGGAGTAGATTATCAGACATGAATGTAGCTCGTTATGACTTTGCTTGTGCTGAAGTCAATGGCTTAGTTTATGCTGTTGGAGGCTATGGGGCAAATGGTGACAGTCTCTCCAGTGCTGAGGTGTATGACCCAAATACTAACAAATGGACTCTGATTAAGAGCCTTCGTCGCCCGAGGTGGGGCTGCTTTGCATGA 687 0.4236 MASKTESENSTETTPSSPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPSNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSAPPAPPAPTSTDSIIYSSSFTNAICWSRLSDMNVARYDFACAEVNGLVYAVGGYGANGDSLSSAEVYDPNTNKWTLIKSLRRPRWGCFA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00105 228 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Sebi123g00105 228 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
Sebi123g00105 228 MobiDBLite consensus disorder prediction 1 20 - -
Sebi123g00105 228 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Sebi123g00105 228 SUPERFAMILY Kelch motif 158 227 IPR015915 GO:0005515
Sebi123g00105 228 Gene3D - 145 228 IPR015915 GO:0005515
Sebi123g00105 228 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 150 IPR008831 GO:0003712|GO:0006355|GO:0016592
Sebi123g00105 228 Pfam Kelch motif 174 220 IPR006652 GO:0005515
Sebi123g00105 228 SMART kelc_smart 186 225 IPR006652 GO:0005515
Sebi123g00105 228 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00105 Sebi-Chr123 1596816 1600593 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Sebi123g00105 Med31 1.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00105 K15153 - gmx:100527879 267.314