Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00097 ATGGGAGAAGTGGCGGTAATGCACTCTGAGCCTCTGCAGTTTGAATGCAATGACATGAAGCATGTGACTGAGAAAGATGTGTATAATCTACCATCAAATGAAGAACACATTGTTGGGGAAAAATCAAGTCAACCAACAGATCACATAAAGATCGAAGACTTGCAAGAGAGAGGTTATATGGAGTATGGATGTCAACATTACCGGAGAAGATGTCAAATTAGAGCCCCCTGTTGTAATGAGATATTTGATTGCCGCCATTGTCACAATGATGCAAAAAATAATATCAACATTGATCAGAAGCATAGACATGACATTCCCCGCCATCAAATCAAACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAGAACTGTATCAACTGTGGTGTTTGCATGGGCAAGTACTTCTGTGAGACATGTAAGCTTTTTGATGACGATGTATCTAAGCAGCAATACCATTGCAATGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCTACAAATGTGGTTGTTGTTACTCAACTCTGCTGAAAAACAGTCACCTTTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCCTTGAATGAGGTCACTGTTTTACTCTGTGGGCATACAATCCATAAGAGCTGCCTAAAGGAAATGAGGGAACATTTCCAGTATGCGTGTCCTCTGTGCTCAAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAAATTGCTGCCACACCAATGCCTGAACCATATCTGAACAAAATGGTCAGTCAGTATTCCTTTTTTCCTGTGATGATGACGAGTATTGTATGTCAGCATGCCAACCATGCAACAGACATAGTCCTTGTTTTGTTGATGTCTTTTTGTGGCTATGCAATTGAGGAGATTGATTTTTATTGTGAGTTAAATGCAAAAGAAGGTGATTCCAAGGAACTAACAGTGATAGTCTCTGGCAGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCATGTCCAGTTCCATCTTGTTGCTCAAAAGTGCTTGA 1083 0.4063 MGEVAVMHSEPLQFECNDMKHVTEKDVYNLPSNEEHIVGEKSSQPTDHIKIEDLQERGYMEYGCQHYRRRCQIRAPCCNEIFDCRHCHNDAKNNINIDQKHRHDIPRHQIKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLFDDDVSKQQYHCNGCGICRTGGCENFFHCYKCGCCYSTLLKNSHLCVEGAMHHDCPVCFEYLFESLNEVTVLLCGHTIHKSCLKEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEPYLNKMVSQYSFFPVMMTSIVCQHANHATDIVLVLLMSFCGYAIEEIDFYCELNAKEGDSKELTVIVSGRFGSFAMIVAKLLMSSSILLLKSA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00097 360 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Sebi123g00097 360 CDD RING-H2_Pirh2-like 199 243 - -
Sebi123g00097 360 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Sebi123g00097 360 SUPERFAMILY RING/U-box 199 248 - -
Sebi123g00097 360 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 41 298 - -
Sebi123g00097 360 SMART ring_2 200 242 IPR001841 -
Sebi123g00097 360 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Sebi123g00097 360 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Sebi123g00097 360 Pfam Ring finger domain 199 242 IPR001841 -
Sebi123g00097 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 260 IPR013083 -
Sebi123g00097 360 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Sebi123g00097 360 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00097 Sebi-Chr123 1434943 1438027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi123g00097 62 272 C2H2 Transcription Factor Family AT3G18290 38.249 2.78e-40 149