Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00055 ATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCATGTGTTCAGAGATACTGCTAATACTAGAGATCGAAATGGTCAAGTATGCAGCCGCCTTGGCTGCAGCAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAGGGAAAATCTTCGAGGTCTTCAATCCGATCCTCTCCAAATGGCAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTCTCCAGGACTAGTAACCCAGGAAAACCCCTTAAAAAGGCTCAGAAAACATTATCATCCCAGTTAGAGACAGATTCATCTGAAACTAGTAGGGTACAAGATGAACCAGAAGTTTCAAAGCTTGTCCCTACACCTGAAAAAATACAGAGAGGGCTTCAAGCTGAAACTGAAAACACAGAGTCAGGTAATGTCACACAGATGGAAGTAGGGAGCTCTAGTTTAGTATCTAATACAAGATCTCGGAGGAATTTTCATCCAAAGTGTGGATCACGTGCTCAAGAAATTCAAAGCACTGGGCCAGTGACACGTGCTGGCACCAGTAGGTATGGCTTAAGGAACCTCAAATGCAACTCTATTTCTGATGTCATCCCTTCTGGTTGTCCACCATCAGATTCAACTCTTAACAGAAGGAAGGATATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCACTGCTAGAGGTAAGAAGATGAGTGGGTCTTCAGTAGAAGGACGAAATTCTGGTTCCAGAAATGGCATATCTATCTCTGATTCAAGAATGTCTAGAAATACACTTCACAGGGACAGGCCAGACAGCAACTTAGGGTCAGTTAGAACACGAAGATCAATTAGTGGTCTTGCCAGGGGAAGGCATTCTAGCCAAGGAAATGCTAATCCTGTGCCCCCCAATCGGTCCCTTGTCATGATACCTTCTTTTCCTCATTCTGGTAATTCTAATGCTCATGATGTATCACACCATACTTCTCTAGAGACTCCTTCAAGTCCAAGCTCTTACAGTAGACCAGGTACTAGCAGCGAGGAATTGTATGGTGTTATGCCCGTGTCTCCTGCAGAATATGGCATTACTCATTCTCTAATAAATCGAGATAGCCTTCGACGACGCTACAACATGGATGGCATTGCAGAGGTATTGTTGGCACTTGAGCGGATTGAGCAAGATGTTGAGCTAACACATGAGCAAATTCTTTTACTGGAGTCCAACTTGTTCCTTACTGGATTAAACTTCTATGATCAGCACAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGAACTGCTGGCTCTGGAAGAGAGGATGGGTAATGTGAGCACAGCTCTAACAGAGGAAGCTCTTTCAGAATGCCTTAAGAGAAGTTTCTATCAATCCTCACCCTCAGGCGAGGCAGCTGAGAGTTGCAATGAGGATAAGGATGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGGTTGCAGATGAAGTGGGGAGTCTTCAATGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTACGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACCGTCAAGTTCATCCTCATCCCATTAA 1629 0.4438 MDEYSGKRAIDGVVVPRKGMGHVFRDTANTRDRNGQVCSRLGCSSRVNSPKGAQIGSSEKGKSSRSSIRSSPNGKEAVGSSSRTFSRTSNPGKPLKKAQKTLSSQLETDSSETSRVQDEPEVSKLVPTPEKIQRGLQAETENTESGNVTQMEVGSSSLVSNTRSRRNFHPKCGSRAQEIQSTGPVTRAGTSRYGLRNLKCNSISDVIPSGCPPSDSTLNRRKDMIKKRNCEGESSSTARGKKMSGSSVEGRNSGSRNGISISDSRMSRNTLHRDRPDSNLGSVRTRRSISGLARGRHSSQGNANPVPPNRSLVMIPSFPHSGNSNAHDVSHHTSLETPSSPSSYSRPGTSSEELYGVMPVSPAEYGITHSLINRDSLRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGNVSTALTEEALSECLKRSFYQSSPSGEAAESCNEDKDDIKCSICQEEYVVADEVGSLQCEHMYHVVCIQQWLRLKNWCPICKASVAPSSSSSSH 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00055 542 SUPERFAMILY RING/U-box 483 535 - -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 174 188 - -
Sebi123g00055 542 Pfam Ring finger domain 488 530 IPR001841 -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 236 266 - -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 316 350 - -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 30 111 - -
Sebi123g00055 542 FunFam E3 ubiquitin-protein ligase arkadia 451 535 - -
Sebi123g00055 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 64 534 IPR045191 GO:0061630
Sebi123g00055 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 536 IPR013083 -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 135 167 - -
Sebi123g00055 542 SMART ring_2 489 529 IPR001841 -
Sebi123g00055 542 ProSiteProfiles Zinc finger RING-type profile. 489 530 IPR001841 -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 282 307 - -
Sebi123g00055 542 Coils Coil 393 413 - -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 206 352 - -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 219 235 - -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 1 190 - -
Sebi123g00055 542 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00055 Sebi-Chr123 723911 726206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi123g00055 386 530 C3H Transcription Factor Family AT2G15530 45.205 1.27e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00055 - - gmx:100787213 807.749