Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00054 ATGTCGGTGCTCATCATTTCCAACATTCCCATTTTACTACTACTATCTTTGTTGTGCTCAAGTCTAAGTGGCCTAGCGTCCCTTGCTAGAGACTCTCAAATTCTGCTACAAGTCAAGAACACGCAGCTTCAGGATAAAAACAATAGCCTCAAAGACTGGGTGCAAAACACACACCACAACCCTTGTAACTGGACCGGCATTACCTGCAATAAACGAAACAAATCAATTGTCTCTATTAACCTCTCTGAGACTGGAATTCACGGCAATTTCCCCTCTGGTTTTTGTCGCATTCAAACCCTAAAAAATCTCTCCCTCTCAGGGAATTTTCTCGGCAATGCTATCTCCTCCCAAGCTCTCCTTCTCTGTTCCCAACTCCATCTCTTAAACATTTGCGACAACTTATTCATCGGAACCTTTCCAGACTTCACATCAGAGTTTTCAGACCTAAGAATATTGGATATCTCGCGAAACAACTTCTCGGGTGATATCACAACGAGTTTTTGCCGATTTCCAAAACTGAAGGTGCTCGTTTTATCAGGAAACCTTCTTAGGGGAACAATCCCTCCTTGTTTTGGCAACCTCAGTGAGCTAATTCGATTAGAAATAGTATACAATCCCTTAAAACCAGGGCCTTTACCTTCCGAAATTGGGAACCTTTCTAAGCTAGAAACTCTGTATCTAAGCAGAGTAAACCTCATAGGGAACATACCAGAGTCATTCGGGAACCTTATCTCGCTCAAGAATTTGGATTTGACTCATAACTCCTTATCAGGTAACATCCCAAATATCATTTCACGCTTGAAAAACGTGGTCAGAATTGAGCTTTACGATAATAACCTTTCTGGTGAAATTCCCCACGGTTTAGCAAACCTAAGCAATTTGGTTCTCTTGGACTTTTCTCAGAATGCTCTCACTGGAAAATTGCCAGACATTTTCGCTTCATTGCCTCTTTCTACACTCAACTTGAACGATAACTTGCTCAATGGAGAAGTCCCTGAAAGTTTGGCTTCAAACCCTAATTTGCATCGATTGAAACTCTTCAACAACAGCTTCACTGGGAAACTGCCACAAGATTTGGGGCTAAACACTGCTTTAGTGGATTTTGATGTCTCAACCAATGATTTCACTGGTGAGTTGCCGAAATACCTTTGCCAAAGGAACACACTTGAGCGTCTTATCACATTCAAGAATCGATTTTCTGGAACTTTGCCTGATGAGTTAGGTGAGTGTAATTCTCTTAACTATGTCAGAATCGAGAATAACCAACACTCTGGCTTGGTGCCATCGAAATTCTGGAACCTTCCAAAGCTTCAATATCTGCAAATGGAAAACAACAGGTTTGAAGGTTCCCTCTCTGCTTCCATTTCACATGCTCTCGGAATCACCAAACTACTTTTATCCAATAACAAATTTTCTGGGCAGCTCCCAACGGGAATCTGTGAACTCGATCAGCTTGTTGAGATTGACGCCAGTAAGAACCAGTTTACTGGTGAAGTCCCCTTCTGTATAACCAGATTGAAGAAGTTACTGAAGCTTAAGATGCAGGAAAACATGTTTTCTGGAGAGATTCCCTGGAATGTGAGTTCTTGGACTTATTTGATTGAGTTGAACTTGTCGCATAATCGATTATCTGGTTCAATCCCATCGAAGCTTGGTACTTTGCGAGATTTGATATACCTTGATCTTGCTTCTAATTCACTGACGGGGAAGATTCCAGTGGAGTTAACGAAATTGACACTTAACCAGTTTAACATCTCTGACAACAAATTGTATGGGGAGGTTCCTTCTGGTTTGAACCATGAAATGTACTTGTCGGGTTTAATGGGTAACCCGGGTCTGTGTAGCTCAGTTATGAAATCCTTGCGTCCTTGTTCAAGACATAAACCCTTTTCTATGCTTGTTAAAGTCATTTTAGGTGTTTGCATTGTGCTCCTTTTGGTGTCCCTGTTGTGGTTCTTCATGAAGAGAAAATTCGTTGCTCTTGGTGGCAAATCCAAGGGCTCTTTTATGACAACAATGTTTCAAAGAGTTGGGTTCAATGAGGAAGACATAGTACCTTTTTTAACCAACAAGAACGTGATTGGAAGGGGGGGTTCTGGTCAAGTGTACATAGTGAGGCTTAAAACAGGGCAGACAGTGGCAGTGAAAAAGCTCTGGGGTGGTGCACAGAAACCAGAAACGGAATTGGTGTTTAGGTCAGAGATTGAGACACTAGGGAGAATTAGGCATGTTAATATTGTGAAATTGTTGTGTACTTGTAGTGGTGATGACTTCAGAACATTGGTGTATGAATATATGGAGAATGGGAGCTTAGGTGATATGTTGCATCATGTGGACATGTGTGAGGAGTTAATGGATTGGACTAGGCGGTTCAAAATTGCTGTGGGTGCGGCTCAGGGGTTGGCTTATTTACATCATGATTGTGTGCCAACTATTGTTCACAGGGATGTAAAGAGTAATAACATATTGCTTGACCATGACTTTGTGCCTCGTGTAGCAGATTTTGGGCTGGCTAAGACACTACAGCACAATGTTAGTGAAGGTGTTATGTCTAGGATTGCTGGATCATATGGTTACATTGCCCCAGAGTATGCTTATACGCTGAAAGTGACTGAGAAGAGCGATGTCTATAGTTTTGGTGTGGTGTTGATGGAATTGATCACTGGAAAGAGGCCAAATGACTCTTCCTTTGGTGAGAACAAAGATATGGTAAAATGGGTCACTAAGACTGCTTTATCACCAGTTCCTGAAGGAGGAAGTGGCAATATTGGAGGAGGTCACGACTGTGTTTTGACCCTAATTGTGGACCCAAGATTGAACCCATTCACTTGTGATTATGAAGAGATTGAGAAGGTTTTAAATGTAGCTTTACTTTGCACCTCAACATTTCCCATTAATAGGCCTTCAATGAGAAGGGTGGTTGAATTGCTCAAGGTTCATAAACTGGCTCGTCCCTAG 2958 0.4178 MSVLIISNIPILLLLSLLCSSLSGLASLARDSQILLQVKNTQLQDKNNSLKDWVQNTHHNPCNWTGITCNKRNKSIVSINLSETGIHGNFPSGFCRIQTLKNLSLSGNFLGNAISSQALLLCSQLHLLNICDNLFIGTFPDFTSEFSDLRILDISRNNFSGDITTSFCRFPKLKVLVLSGNLLRGTIPPCFGNLSELIRLEIVYNPLKPGPLPSEIGNLSKLETLYLSRVNLIGNIPESFGNLISLKNLDLTHNSLSGNIPNIISRLKNVVRIELYDNNLSGEIPHGLANLSNLVLLDFSQNALTGKLPDIFASLPLSTLNLNDNLLNGEVPESLASNPNLHRLKLFNNSFTGKLPQDLGLNTALVDFDVSTNDFTGELPKYLCQRNTLERLITFKNRFSGTLPDELGECNSLNYVRIENNQHSGLVPSKFWNLPKLQYLQMENNRFEGSLSASISHALGITKLLLSNNKFSGQLPTGICELDQLVEIDASKNQFTGEVPFCITRLKKLLKLKMQENMFSGEIPWNVSSWTYLIELNLSHNRLSGSIPSKLGTLRDLIYLDLASNSLTGKIPVELTKLTLNQFNISDNKLYGEVPSGLNHEMYLSGLMGNPGLCSSVMKSLRPCSRHKPFSMLVKVILGVCIVLLLVSLLWFFMKRKFVALGGKSKGSFMTTMFQRVGFNEEDIVPFLTNKNVIGRGGSGQVYIVRLKTGQTVAVKKLWGGAQKPETELVFRSEIETLGRIRHVNIVKLLCTCSGDDFRTLVYEYMENGSLGDMLHHVDMCEELMDWTRRFKIAVGAAQGLAYLHHDCVPTIVHRDVKSNNILLDHDFVPRVADFGLAKTLQHNVSEGVMSRIAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDSSFGENKDMVKWVTKTALSPVPEGGSGNIGGGHDCVLTLIVDPRLNPFTCDYEEIEKVLNVALLCTSTFPINRPSMRRVVELLKVHKLARP 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00054 985 Gene3D Ribonuclease Inhibitor 315 630 IPR032675 -
Sebi123g00054 985 Gene3D Transferase(Phosphotransferase) domain 1 766 983 - -
Sebi123g00054 985 SMART LRR_typ_2 219 242 IPR003591 -
Sebi123g00054 985 SMART LRR_typ_2 434 457 IPR003591 -
Sebi123g00054 985 SMART LRR_typ_2 170 193 IPR003591 -
Sebi123g00054 985 SMART LRR_typ_2 554 578 IPR003591 -
Sebi123g00054 985 SMART LRR_typ_2 291 314 IPR003591 -
Sebi123g00054 985 SMART LRR_typ_2 243 267 IPR003591 -
Sebi123g00054 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Sebi123g00054 985 SMART serkin_6 688 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi123g00054 985 FunFam Leucine-rich repeat receptor-like protein kinase TDR 316 626 - -
Sebi123g00054 985 SUPERFAMILY L domain-like 40 207 - -
Sebi123g00054 985 SUPERFAMILY L domain-like 166 421 - -
Sebi123g00054 985 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Sebi123g00054 985 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 317 978 - -
Sebi123g00054 985 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
Sebi123g00054 985 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Sebi123g00054 985 Gene3D Phosphorylase Kinase; domain 1 681 765 - -
Sebi123g00054 985 FunFam Leucine-rich repeat receptor-like protein kinase 766 984 - -
Sebi123g00054 985 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 65 315 - -
Sebi123g00054 985 SUPERFAMILY Protein kinase-like (PK-like) 688 978 IPR011009 -
Sebi123g00054 985 ProSiteProfiles Leucine-rich repeat profile. 245 267 IPR001611 GO:0005515
Sebi123g00054 985 ProSiteProfiles Protein kinase domain profile. 688 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi123g00054 985 SUPERFAMILY L domain-like 397 614 - -
Sebi123g00054 985 Pfam Protein kinase domain 690 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi123g00054 985 Gene3D Ribonuclease Inhibitor 28 314 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00054 Sebi-Chr123 673514 676827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi123g00054 31 981 Receptor kinase-like Gene Family AT5G65710 54.855 0.0 1010
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi123g00054 Pkinase 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00054 - - gmx:100813889 1364.36