Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00044 ATGGAGCTAAAAAATGAGAAGCTAGTCAGGTTCTCCAATGATGGAAAACAGAATCTTGAACCTCCTTGGGAAAAGATAGATGCTCACAAATACCATGAGAAGCCATTCCCAGCCTATAAGATTCAGGCAGAATATGAAATTACTAGTGGTGATAATAAGAACAAAATGAATATCAGATTCCCCACTTTTGGAAAGTTTAAGGTTTTCCCAGAGAACCATGAGACATGGAAGAAGAGAATTATTGATCCTGGCAGTGATATGTTTTTGGAGTGGAACAGGGCTTTCCTCTTTGCTTGCATACTAGCATTGTTTGTTGATCCACTGTTTTTCTACCTTCCCTCAGTAGCAAATGATGGGAATTCATCATGTATGGCTACTGATTTGAATTTAGGAATTGTTGTCACATGTTTCCGTACATTTGCTGATGTTTTCTATCTGCTGAACATGGCCATAAAGTTCAGGACAGCCTATGTGTCACCAAGTTCAAGGGTTTTTGGAAAGGGTGAACTTGTTATGGATCCAAGGTTGATTGCTAGGCGGTATTTGAGATCAGATTTCTTCCTAGATCTTGTAGCTACACTGCCTCTTCCCCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCTCTTGTACTGATTGTTCTGCTTCAATATGCCCCCAGATTATATTTGATTTTCCCTTTAAGTTCTCAGATTATTAAAGCCACTGGTGTGGTTACAAAGACAGCTTGGGCTGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCTAGTCATGTCTTGGGGGCATCATGGTACCTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGTAGAAATGAAATCCTCCCTGTAAAATGTGTTCTTAAGTACTTGGATTGCAGTACTTTATACAATGGTGATCGCATGAAGTGGGCAAATACCACTTCTGTGTTTGGTAGCTGCAATCCAGAAAATAGCACCAATTTCAACTATGGAATTTTTGGAAATGCAGTGGAAAATAATGTTGTCTCCTCTGCATTTATAGAGAAGTACCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTGAGTTCCTATGGCCAGGGTTTGACTACAAGCACATTCGTTTGGGAAACTGCATTTGCAATAGTCATGTCTATTCTTGGTCTAGTTTTGTTTGCTCACTTAATTGGTAACATGCAGACCTATTTGCAATCCATTACTGTGAGGCTTGAAGAGTGGAGACTCAAGCGACGTGACACTGAAGAATGGATGAGTCATCGCCAGCTTCCACAACATCTCAGAGAACGTGTCAGAAGATTTGTTCAATACAAATGGCTTGCAACTCGTGGGGTTCCATTTTTCTCTCAAATGGATGATCAGCTACTTGATGCAATATGTGAGCGATTGGTATCATCCTTGAGTACTCAAGGCACATACATAGTCAGAGAAGGAGATCCTGTCACAGAGATGCTTTTTATCATTAGAGGGAGACTTGAAAGCTCAACAACAAATGGAGGCAGAACTGGTTTCTTTAACTCCATCACCTTGAGGCCTGGTGATTTTTGTGGAGAAGAACTACTTGCTTGGGCATTGCTTCCAAAATCAACTCTCAATTTGCCTTCTTCTACAAGAACAGTTAGAGCCCTTGTAGAAGTGGAAGCCTTTGCACTCAGAGCAGAAGATCTTAAGTTTGTAGCCAATCAATTTAGACGTCTCCACAGCAAGAAGTTACAGCATACCTTCCGTTTCTACTCTTATCATTGGAGGACATGGGCTGCTTGCTTCATTCAGGCTGCATGGCGCCGGTACAAGAAGAGAGTGTTGGCAAATAGCCTTAGCTTGAGGGAATTCAAGTCCTTCAATGATGGTGAACAAGTGAGGAATCAAATGGAACATGAAGAAGAAGAGAGCAGTGCTGTGACTTCAAACACTGCACAAGTAAAACAGCACCTAGGTGTCACTATACTGGCTTCAAGATTTGCTGCAAACACAAGGAGAGGGGTTCAGAAGATCAAGGATGTAGAGCTCCCCAAGTTACAAAAGCCTGAAGAACCAGATTTCTCAGTAGAGCCTGATGAAGATTAG 2106 0.4141 MELKNEKLVRFSNDGKQNLEPPWEKIDAHKYHEKPFPAYKIQAEYEITSGDNKNKMNIRFPTFGKFKVFPENHETWKKRIIDPGSDMFLEWNRAFLFACILALFVDPLFFYLPSVANDGNSSCMATDLNLGIVVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGKGELVMDPRLIARRYLRSDFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYAPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNEILPVKCVLKYLDCSTLYNGDRMKWANTTSVFGSCNPENSTNFNYGIFGNAVENNVVSSAFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAIVMSILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQHLRERVRRFVQYKWLATRGVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRYKKRVLANSLSLREFKSFNDGEQVRNQMEHEEEESSAVTSNTAQVKQHLGVTILASRFAANTRRGVQKIKDVELPKLQKPEEPDFSVEPDED 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00044 701 CDD CAP_ED 460 591 IPR000595 -
Sebi123g00044 701 ProSiteProfiles cAMP/cGMP binding motif profile. 460 543 IPR000595 -
Sebi123g00044 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 71 458 - -
Sebi123g00044 701 Pfam Ion transport protein 91 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi123g00044 701 SUPERFAMILY Voltage-gated potassium channels 85 411 - -
Sebi123g00044 701 SMART cnmp_10 460 591 IPR000595 -
Sebi123g00044 701 SUPERFAMILY cAMP-binding domain-like 456 578 IPR018490 -
Sebi123g00044 701 Pfam Cyclic nucleotide-binding domain 483 571 IPR000595 -
Sebi123g00044 701 MobiDBLite consensus disorder prediction 678 701 - -
Sebi123g00044 701 Gene3D - 95 415 - -
Sebi123g00044 701 Gene3D Jelly Rolls 458 578 IPR014710 -
Sebi123g00044 701 MobiDBLite consensus disorder prediction 678 693 - -
Sebi123g00044 701 FunFam Cyclic nucleotide-gated ion channel 1 458 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00044 Sebi-Chr123 481938 485564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi123g00044 10 697 Ion Channels AT2G24610 67.403 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00044 K05391 - gmx:100803334 1257.28