Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00041 ATGCAACAGAGGCTCAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAACAACAGATGTACCACCCTGGCATGCTTGCCGCTGCTATGTCTCAGATGGAACCTGTTCCAAGTGGAAATCTGCCTCCTGGTTTTGATACTTCTGCATGTCGTAGTGTTTATGTAGGAAATATTCATCTAAACGTCACCGACAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTCATAAGAAGAGAAAAGTCCTCGTACGGCTTTGTAGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGGCAACTATATGGTCAAGCACTTAAAGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACCTCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCATAAAACCGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGACCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATACGATGCAATTGGGCAACTAAGGGTGCTGGTGGCAGCTCCAATGAAGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAAGATGCTCCTGAAAACAATCCTTCATACACAACAGTTTATGTCGGCAGCCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATGGATTGGGAGCTGGGGTAATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGTCTAATGGAAGACTAATTCGTGGGAAGGCTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGCTATTCTCCCGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCACTTCTGCAAATGACCGGACAACATGGCCTAGCTCCTGCTTCAATGGGCATAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACTGGGTTTGATGACTCCAAAAAGGGATCTATGTTTGCTAGAAAGGGCAGCGAGTTTTATGTTTGA 1329 0.4567 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHLNVTDKLLAEVFQSAGPLAGCKLIRREKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKNNDNQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGSLPHDVTQAELHCQFHGLGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMSNGRLIRGKAMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGGSQAMYDGYTGFDDSKKGSMFARKGSEFYV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00041 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Sebi123g00041 442 MobiDBLite consensus disorder prediction 217 262 - -
Sebi123g00041 442 FunFam Oligouridylate-binding protein 1C 239 340 - -
Sebi123g00041 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Sebi123g00041 442 FunFam Nucleolysin TIAR-like protein 1 138 - -
Sebi123g00041 442 SUPERFAMILY RNA-binding domain, RBD 248 340 IPR035979 GO:0003676
Sebi123g00041 442 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 339 - -
Sebi123g00041 442 Gene3D - 138 237 IPR012677 -
Sebi123g00041 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Sebi123g00041 442 Gene3D - 1 137 IPR012677 -
Sebi123g00041 442 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Sebi123g00041 442 Gene3D - 240 340 IPR012677 -
Sebi123g00041 442 SMART rrm1_1 56 125 IPR000504 GO:0003723
Sebi123g00041 442 SMART rrm1_1 263 332 IPR000504 GO:0003723
Sebi123g00041 442 SMART rrm1_1 141 214 IPR000504 GO:0003723
Sebi123g00041 442 FunFam Nucleolysin TIAR-like protein 139 237 - -
Sebi123g00041 442 CDD RRM2_PUB1 139 218 - -
Sebi123g00041 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Sebi123g00041 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Sebi123g00041 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Sebi123g00041 442 SUPERFAMILY RNA-binding domain, RBD 134 244 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00041 Sebi-Chr123 429869 437638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi123g00041 47 336 Eukaryotic Initiation Factors Gene Family AT4G34110 26.246 7.74e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00041 K13201 - gmx:100777108 804.283