Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00039 ATGTGGTTGCCAAAGAATCAGTCAGAGAAGAAGGATGGTGTGAATGGATTAATAGCAGTGGCAATAGACAAAGAAAAAGGAAGCCAAAATGCACTCAAATGGGCTGTTGACAATCTCCTCACAAGAAGTGCAACTGTAATTCTTGTCCATGTCAAGCTTCAGTCACCTTCTCTTTCTCAATCACCTTCTATTTTCACCCCAAGGTTAGGGATAAATGTTTTTGGTGAAGAGAGTGTAGCATATGTATCCAGAGCTTTGATTCAATATGTTGCTCAAGCAGGAATTGAGCATCTGATTCTTGGCTCTTCAACAAAAACTGGTTTGCTCAAAAGATTCAAGGTATCAGATGTTCCAGGAACAGTAGCAAAAGGGGCACCAGATTTCTGTACAGTGTATGTTATTTCTAAAGGGAAGATTCACTCAATGCGATCTGCTTCTCGACCTGCTCCAGGAATTAACCCTGTCCAGGTTGGTCAATTTAGTATCAGATCAGACCAATCAGACTCAGTTGTGTCATTGAAAGAACAAGAAAGGCTCTCCCTTGATGCACCACCACGTAGATCACATGATGAAATAGAAACATTCAGGTCACCATTCACTAGAAAAGGTTACAATGGGAGATCATATGGGGAAACTCCCAAACTAGATTCTGATATATCCTTTGTAAGCACTGGAAGGACAAGTAGTGCAGACCTATACCATTCAATACATAGCAACCCAGATACAGGGATGTCTACCCCTCCACTATCATTTAGTTCAGAAATAGATGGAAACTACAGCTTTGACTCCATTCATCATGCAAGGAGGTCTACGGATATCAATTCTCCTGCTGAATTTGCATCCTTCTCATTTGATAGTGAAAGGCTTTCAACTTCTACATCACAAGCTGTGGATGATATGGAGGCTGAAATGAGGAGATTGAAGTTGGAGCTCAAGCAAACAATGGAAATGTATAACACAGCCTGTGTAGATGTCAGGTATAGAAGGTATTCAATTGAGGAGATTGAAGCTGCAACAGAATTTTTCTCAGAGTCCCTCAAGATTGGAGAAGGGGGATATGGTCCAGTTTTTAAGTGCTTTCTGGACCATACATCTGTTGCAGTGAAGGTCCTACGTCCTGATGCAGCACAAGGAATGGCACAGTTTCAAAGAGAGGTTGAGGTACTGAGCTGCATACGGCATCCAAACATGGTTCTTCTTGTAGGAGCCTGTCCAGAATATGGTTGCCTTGTGTATGAGTACATGGCTAATGGAAGCTTAGATGATCGCCTCTTTCACCGAGGCAACACTCCCCCATTATCATGGCAACTCAGGTTCAAGATTGCAGCTGAAATAGGCACTGGCTTGCTCTTCCTTCATCAGACAAAACCAGAACCTCTGGTGCATAGGGACTTGAAACCAGCAAACATCTTGATTGACAGAAACTATGTAGCTAAGATCAGTGATGTTGGTTTGGCAAGGCTAGTGCCACCATCAGTGGCTGATAGTGTGACACAATACCGCATGACATCCACAGCAGGAACTTTCTGCTATATAGATCCTGAGTATCAGCAAACAGGAATGCTTGGGGTCAAATCAGATATATACTCTCTTGGCATCATTTTCCTGCAAATTTTGACAGCAAGATCACCAATGGGTTTGGCTCATCATGTTGAAGGAGCCATTGAGAAGGGAACTTTTTCTGAGATGTTGGATCCTACAGTGCCTGATTGGCCAGTAGAAGATGCATTGAGCCTTGCAAAGATAGCAGTACAGTGTGCTGAATTAAGGAGGAAAGATAGGCCTGATCTTGCCAAGATTGTACTACCAGAACTCAATAGGCTAAAAGAACTTGCTGAAAATAGTGACCAACATTCAACTTTGGGTCACTCTATAAGTGTGTCCCATGAGAGACAAGTTTCTGTGCAGTTGGATGAAAACTGTCCTACATTTCCTCACTCTGGAGAGATTAGAAGAAACACATCAGTTGGTGTCTGA 1977 0.4254 MWLPKNQSEKKDGVNGLIAVAIDKEKGSQNALKWAVDNLLTRSATVILVHVKLQSPSLSQSPSIFTPRLGINVFGEESVAYVSRALIQYVAQAGIEHLILGSSTKTGLLKRFKVSDVPGTVAKGAPDFCTVYVISKGKIHSMRSASRPAPGINPVQVGQFSIRSDQSDSVVSLKEQERLSLDAPPRRSHDEIETFRSPFTRKGYNGRSYGETPKLDSDISFVSTGRTSSADLYHSIHSNPDTGMSTPPLSFSSEIDGNYSFDSIHHARRSTDINSPAEFASFSFDSERLSTSTSQAVDDMEAEMRRLKLELKQTMEMYNTACVDVRYRRYSIEEIEAATEFFSESLKIGEGGYGPVFKCFLDHTSVAVKVLRPDAAQGMAQFQREVEVLSCIRHPNMVLLVGACPEYGCLVYEYMANGSLDDRLFHRGNTPPLSWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILIDRNYVAKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARSPMGLAHHVEGAIEKGTFSEMLDPTVPDWPVEDALSLAKIAVQCAELRRKDRPDLAKIVLPELNRLKELAENSDQHSTLGHSISVSHERQVSVQLDENCPTFPHSGEIRRNTSVGV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00039 658 SMART serkin_6 342 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi123g00039 658 Pfam Universal stress protein family 18 60 IPR006016 -
Sebi123g00039 658 SUPERFAMILY Protein kinase-like (PK-like) 316 601 IPR011009 -
Sebi123g00039 658 CDD STK_N 17 137 - -
Sebi123g00039 658 Gene3D Phosphorylase Kinase; domain 1 321 414 - -
Sebi123g00039 658 ProSiteProfiles Protein kinase domain profile. 342 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi123g00039 658 Gene3D - 17 158 - -
Sebi123g00039 658 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 134 - -
Sebi123g00039 658 Pfam Protein kinase domain 344 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi123g00039 658 Coils Coil 297 317 - -
Sebi123g00039 658 FunFam U-box domain-containing protein 51 415 615 - -
Sebi123g00039 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Sebi123g00039 658 Gene3D Transferase(Phosphotransferase) domain 1 415 631 - -
Sebi123g00039 658 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 314 414 - -
Sebi123g00039 658 PANTHER OS02G0152300 PROTEIN 325 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00039 Sebi-Chr123 409284 413985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi123g00039 16 625 Receptor kinase-like Gene Family AT1G17540 42.611 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sebi123g00039 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00039 - - gmx:100803867 804.283