Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00028 ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGACGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGAAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGGGATTTCAAGACTGCAATGTATGCTAATTTTACACCAGAAAAATTTGAAAATTTTTGGCAGCAATTGATTTTGAAACACGGGCTTGTAGAAAACAAGTGGGTTTCTAAAACCTATGAGAACAAGTATATGTGGGCTAGTGCATACTTGCGTGATAAGTTCTTTGGTCGTATAAGGACAACTTCACAATGTGAAGCCATTAATTCTCTTGTCAAGTCATATGCTAATAACAAATGTAGCATTATTGACTTCATGCATAAATTTGAGCAAGTGGTGAGGGAATATAGAAACAATGAGCTCATGGCAGATTTTAAGTGTTTCTGGTCAGAACCTGTGCTAACCACTTCTCTTTACAAGATTGAGCGTGATGCTTCAAAAATTTTCACCCAAGAGATTTTTAAGGATGTTAAATCTGAAATTGAAGCTGCTGGTGCCTTGAATGTTATTGAACGTGTGATAAATGGTGAGAAATTAATATTGAAGATGAACAAATATTGTGATATTGGAAGTGAATTTGTTGTTGATTATGATACTGTGAACTGTAATTTTTTCTGTGAATGCAAACTATTTGAATCTCGTGGCATTCCATGTGCTCATATTATATGTGCCATGAAAAATGAGCACATAGACTCCATTCCTAGCAGTTTGATATGCAAACGGTGGACAAAAACTGCGAAGAGTGATATTATTTCTGCAAGTCGATTGGATGATTTAGATTCTGATGTCATGTCTGGGGCCCGTGTTGGGGCTGCAGCTGCTGCTTGTAATAGATTATGCAGTATTGCTAGAGAGAAGAATGCATGTTTCAATGATATTTTAAATGATATCTTTAAGCTGCTTAATAAGTATGAGAATCAAGGGGATCCAAACAACACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAGTGAAAACAAAAGGTGCTCCATCCAAGAAAAAGTACGGAAGGAAGAGGAGATGTTCAAATTGTAGTAGACCTGGACACATAGCTAGGAAATGTCCTAGGCTCCTTTCCACGGATGATCAAGTTCCTATGGATGGTGATTCTTCACATTCAGATGGTGATGGTTTCACAATAGGAGAAGAAAATGATAAAGAAGGAAATCCCGTTGATCAATGTGATGACCAGCAAATTGGGTCTAAAAATCAGTCAAGAATGAGGAAAGATAATAATGTAAAAGGGAAAGGTACTGGTTCTTTCAAAATGAAGGAGAAAACGGTAAATCGGTCAACACATAATTCAGTGAAGCAGCCTAAAATTGAACCTATGGTTTCTTCAAGTGATGCTAATGCTGACAATCCCCAACACCAAAATTCAAACCCTGTTTATGCAACAACCAGAAGGAGTTAA 1950 0.3692 MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVDEDLTYEQYKSIIDLTANDVRGMEFGSDEHACKFYDSYARCHGFVARKDDIKRDAKDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPKYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGDFKTAMYANFTPEKFENFWQQLILKHGLVENKWVSKTYENKYMWASAYLRDKFFGRIRTTSQCEAINSLVKSYANNKCSIIDFMHKFEQVVREYRNNELMADFKCFWSEPVLTTSLYKIERDASKIFTQEIFKDVKSEIEAAGALNVIERVINGEKLILKMNKYCDIGSEFVVDYDTVNCNFFCECKLFESRGIPCAHIICAMKNEHIDSIPSSLICKRWTKTAKSDIISASRLDDLDSDVMSGARVGAAAAACNRLCSIAREKNACFNDILNDIFKLLNKYENQGDPNNTVRSSFKDVGDPYLVKTKGAPSKKKYGRKRRCSNCSRPGHIARKCPRLLSTDDQVPMDGDSSHSDGDGFTIGEENDKEGNPVDQCDDQQIGSKNQSRMRKDNNVKGKGTGSFKMKEKTVNRSTHNSVKQPKIEPMVSSSDANADNPQHQNSNPVYATTRRS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00028 649 Pfam Zinc knuckle 519 534 IPR001878 GO:0003676|GO:0008270
Sebi123g00028 649 MobiDBLite consensus disorder prediction 611 649 - -
Sebi123g00028 649 MobiDBLite consensus disorder prediction 1 32 - -
Sebi123g00028 649 MobiDBLite consensus disorder prediction 501 649 - -
Sebi123g00028 649 MobiDBLite consensus disorder prediction 555 571 - -
Sebi123g00028 649 Gene3D - 503 574 - -
Sebi123g00028 649 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 174 IPR031052 GO:0006355
Sebi123g00028 649 SMART c2hcfinal6 519 535 IPR001878 GO:0003676|GO:0008270
Sebi123g00028 649 ProSiteProfiles Zinc finger SWIM-type profile. 369 405 IPR007527 GO:0008270
Sebi123g00028 649 SUPERFAMILY Retrovirus zinc finger-like domains 510 539 IPR036875 GO:0003676|GO:0008270
Sebi123g00028 649 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Sebi123g00028 649 SMART 26again6 380 407 IPR006564 GO:0008270
Sebi123g00028 649 MobiDBLite consensus disorder prediction 586 610 - -
Sebi123g00028 649 ProSiteProfiles Zinc finger CCHC-type profile. 518 535 IPR001878 GO:0003676|GO:0008270
Sebi123g00028 649 MobiDBLite consensus disorder prediction 509 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00028 Sebi-Chr123 311216 313969 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi123g00028 FAR1 2.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00028 - - ccaj:109792835 401.749