Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi123g00010 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCATTTCAAACCTTCTGTCCTTGAATCCTCTGACCAAGAAAATGGTGGCAAGAGTGAAAGAACCTGGCCCAGTTTTGGTGAGTTCAGCTTGGAGCAACTGAAGGCTGCCACAAATGGGTTCTCCTCAGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTTTTCAAAGGGAAACTTGAGAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTCGCTTGGCCTGATTCTCGCCAATTCCTTGAAGAAGCCAAACAAGTGGGGAGCCTTAGAAGTGAACGTTTGGCAAATTTGATTGGTTGTTGCTATGAAGGGGAGGAGAGGCTGCTAGTAGCAGAGTTTATGCCACATGAAACTCTTGCTAAGCACCTCTTTCATTGGGAGGCACAGCCTATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACCAGTAAAGGCAGGGGTTTGTATCATGATCTCAATGCTTACAGGATCTTGTTTGATCAGGATGGTAATCCAAGGTTGTCTTGCTTTGGGCTTATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAATTTGGCTTTCACTCCTCCTGAGTACTTAAGGACTGGTAGAGTGACAGCAGAGAGTGTGGTTTACAGTTTTGGGACCTTGTTGCTGGATCTCTTAAGTGGTAAACACATTCCCCCAAGCCATGCACTAGACCTGATACGTGGCAAAAACTTCTTGATGCTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAAGATGATGGAACTGAGTTAGTTCGTTTGGCTTCCCGTTGCTTACAGTATGAAGCTCGTGAGAGGCCAAATGCAAAGTCTCTTGTTGCATCTCTTATGTCACTTCAGAAAGAAACAGAGGTCCCTTCATATGTTCTGATGGGTCTCCGGCTTGAAACTGCATCCTCAACAAAGGCATTGTCATTAACACCATTTGGTGAAGCTTGTTTGAGATTGGATCTTACTGCCATACATGAAATATTAGAGAAGATTGGTTACAAGGATGATGAAGGAATTGCTAATGAGCTTTCCTTTCAACTGTGGACTAGTCAAATGCAGGAGACCTTGAATTTGAAGAAACATGGAGATACTGCTTTTAGAGCTAAGGACTTTGTCACTGCCATTGACTGCTACACACAATTCATAGATGGAGGGACCATGGTGTCACCAACAGTGTATACAAGGAGATGCTTAGCTTATTTGATGAATGACATGCCACAGGAAGCATTAGGGGATGCTATGCAAGCCCAAGTGGTATCTCCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAACTTGTCTTTTCAGTCTTGGAATGGAAAATGATGCACAAGAGACTCTCAAAGATGGGACTAACATGGAAGCCAAAAGAAACAAAAATTGA 1473 0.4386 MGARCSKFSFCWFHSHFKPSVLESSDQENGGKSERTWPSFGEFSLEQLKAATNGFSSENIVSEHGEKAPNVVFKGKLENGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGCCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLMSLQKETEVPSYVLMGLRLETASSTKALSLTPFGEACLRLDLTAIHEILEKIGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYTRRCLAYLMNDMPQEALGDAMQAQVVSPEWPTALYLQATCLFSLGMENDAQETLKDGTNMEAKRNKN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi123g00010 490 FunFam probable serine/threonine-protein kinase At5g41260 135 326 - -
Sebi123g00010 490 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Sebi123g00010 490 Gene3D Tetratricopeptide repeat domain 382 490 IPR011990 GO:0005515
Sebi123g00010 490 Gene3D Transferase(Phosphotransferase) domain 1 135 326 - -
Sebi123g00010 490 SUPERFAMILY TPR-like 386 479 IPR011990 GO:0005515
Sebi123g00010 490 FunFam probable serine/threonine-protein kinase At4g35230 383 490 - -
Sebi123g00010 490 ProSiteProfiles Protein kinase domain profile. 58 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi123g00010 490 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
Sebi123g00010 490 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Sebi123g00010 490 SUPERFAMILY Protein kinase-like (PK-like) 33 319 IPR011009 -
Sebi123g00010 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 489 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi123g00010 Sebi-Chr123 113861 117235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi123g00010 43 309 Glycoside Hydrolase AT3G07070 34.237 5.17e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi123g00010 PK_Tyr_Ser-Thr 5.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi123g00010 - - gmx:100814477 947.962