LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi122g00117	ATGCCGCCGTCTATTGTAGGTCCCACCGTCATTGCCATCAATGACGGCCGCAACAGCCAACAAGCCGTCAAATGGGCGGTGGATCACCTCCTGAAGAAGAACTCCTCCTGCACCCTTATTCATGTTCGCACCAAGCCTATCCATCATCATGATGTTGATGTTCCTAGAAACGGTCGTCCACCAACTGAAGATGAATTGCACCAACTCTTCCTTCCCTTTCGAGGATTTTGTGCTAGAAAAGGGATCGTGGCAACAGAGTTGGTCCTGCATGACATTGATATTCCGAGTGCCCTTACTGATTATGTCACTGAAAATTCTATCAGCCATATCGTTGTTGGTGCATATGCTTCCCCCTGGAGTGCACTTATAAGAAGATTTAATAGAGATGTAGACGTGCCAACTAGCTTAGCAAAGTCTTTGCCAGAGTCTTGCACATTGCATGTTATATCAAAAGGAAAAGTACAAACTATCCGACCAACAGGTCATCCAGCTCCAGCTCCTCAGATTATTCAACCTCAGAATGTTAACGTCACACCAAATACATCTATGAAAGACATAGTCACTCTCTTGCAAAATGCTCCATTGGTTCACCCAAATAACTTTATTGCCAATATCCATGATTCTGAAGATATAAACAGAAAACCATTCAAAGATGCTGCCATTGCACCAGACTCTAGGAATGTTTGGGAATCTTTACGTGAAATGAAAGATGCTATGCTAATGACATCACGAAAATCCAATGAAGATACCAATTCACCAAGAGGTCCAAGACTATCAGCTGGAAGCTCCTCATCACTAAATTCATCAAATCGAACCACTCCCAACAATAGTGACAGCTCAGGGCGACTTGGTCTTCCATTGACTGATGGAAACCATGAAGTACATGGAAACTCATCAGACAGTTCTAAGAGCAACTCTTCTCCAAAGCCCCTAATAAGCTTGGAGGCAGAAATAAAGAAATTAAAACTAGAACTGAAGAAAACAACAGAGCAATATGGTATGGCTTGCAGAGAAGCTGCTTCAGCAAAACTGAAGGCAACGGAGCTTCAAAAATTTAGGCAAGAAAAAGAACGCAACGTTGAAAAAGCTAAGCTTGCTCAAGAGGCTGCATTGGCTTTGGCAGAGGTAGAGAGGCAAAAGGCCAAGGCAGCTATTGAGGCAGCAGAAGTGTCACAAATCCTAGCTCAAATGGAAACTGTAAAGAGAAAGCAAGCCGAAATAAGAGCCAAGCATGAAGAAGAAGAAAGGAGAAAAGCATTACATGAAGCTGTGGTTAATAGTATTCCATACAGAAGATACGATATTAAAGAGATTGAAGCTGCAACTAATAACTTTGACGATGCTCTGAAAATTGGTGAAGGAGGATATGGACCCGTTTTTAAAGGAGTGCTTGATCACACTGTTGTTGCCATTAAGGTCGTGAAACCAGACTTAGCCCATGGAGAGAGGCAATTTCAACAAGAGGTTCTTGTTCTAAGCACCATAAGACATCCGCACATGGTGCTCCTTCTAGGTGCATGTCCAGAGTTTGGATGCCTTGTGTATGAGTACATGGAATATGGCAGCTTAGAAGATCGTTTGTTCCAAAAAGATGACACTCCACCAATTCCATGGCAAGCTCGTTTCAAAATAGCATCAGAGATTGCCACTGGCCTTCTTTTCCTTCACCAAACAAAGCCTGAGCCTTTGGTGCACCGTGACATGAAGCCAGCAAACATTCTCTTAGACAGGAACTATGTGAGCAAGATCAGTGATGTGGGTTTGGCACGGCTTGTTCCACCTTCTGTAGCCAACAAAACCACTCAATACCGCTTGACAGGTGCAGCTGGAACATTTTGCTACATTGACCCAGAGTATCAACAAACAGGGTTGTTGGGTGTGAAATCAGACATATATTCATTAGGTGTGGTGCTGTTACAGATTATTACTGCAAAACATCCAATGGGTTTGTCCCTTTTGGTTGAGAAAGCTATCCAGACAGGGACTTTCAAAGAGATGCTTGATCCAAGAGTGGATTGGCCTATTGAAGAGACTTTGTCATTTGCTAGGTTGGCCTTAAAGTGTTGTGAGTTAAGAAAACGAGATAGACCAGATCTTGGTACTGTCATTTTGCCAGAGCTGGAACGAATATCAGAGATGTGGGACTGGGAGGACTCACTCACATTCACGGAGTAA	2175	0.4322	MPPSIVGPTVIAINDGRNSQQAVKWAVDHLLKKNSSCTLIHVRTKPIHHHDVDVPRNGRPPTEDELHQLFLPFRGFCARKGIVATELVLHDIDIPSALTDYVTENSISHIVVGAYASPWSALIRRFNRDVDVPTSLAKSLPESCTLHVISKGKVQTIRPTGHPAPAPQIIQPQNVNVTPNTSMKDIVTLLQNAPLVHPNNFIANIHDSEDINRKPFKDAAIAPDSRNVWESLREMKDAMLMTSRKSNEDTNSPRGPRLSAGSSSSLNSSNRTTPNNSDSSGRLGLPLTDGNHEVHGNSSDSSKSNSSPKPLISLEAEIKKLKLELKKTTEQYGMACREAASAKLKATELQKFRQEKERNVEKAKLAQEAALALAEVERQKAKAAIEAAEVSQILAQMETVKRKQAEIRAKHEEEERRKALHEAVVNSIPYRRYDIKEIEAATNNFDDALKIGEGGYGPVFKGVLDHTVVAIKVVKPDLAHGERQFQQEVLVLSTIRHPHMVLLLGACPEFGCLVYEYMEYGSLEDRLFQKDDTPPIPWQARFKIASEIATGLLFLHQTKPEPLVHRDMKPANILLDRNYVSKISDVGLARLVPPSVANKTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITAKHPMGLSLLVEKAIQTGTFKEMLDPRVDWPIEETLSFARLALKCCELRKRDRPDLGTVILPELERISEMWDWEDSLTFTE	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi122g00117	724	ProSiteProfiles	Protein kinase domain profile.	445	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi122g00117	724	Gene3D	Transferase(Phosphotransferase) domain 1	518	719	-	-
	Sebi122g00117	724	Coils	Coil	311	331	-	-
	Sebi122g00117	724	Gene3D	Phosphorylase Kinase; domain 1	423	517	-	-
	Sebi122g00117	724	Coils	Coil	397	422	-	-
	Sebi122g00117	724	SMART	serkin_6	445	710	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi122g00117	724	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	10	118	-	-
	Sebi122g00117	724	MobiDBLite	consensus disorder prediction	244	284	-	-
	Sebi122g00117	724	PANTHER	OS02G0152300 PROTEIN	10	712	-	-
	Sebi122g00117	724	Pfam	Protein tyrosine and serine/threonine kinase	450	702	IPR001245	GO:0004672\|GO:0006468
	Sebi122g00117	724	Pfam	Universal stress protein family	10	114	IPR006016	-
	Sebi122g00117	724	MobiDBLite	consensus disorder prediction	292	310	-	-
	Sebi122g00117	724	Coils	Coil	349	393	-	-
	Sebi122g00117	724	Gene3D	HUPs	9	130	IPR014729	-
	Sebi122g00117	724	SUPERFAMILY	Protein kinase-like (PK-like)	423	702	IPR011009	-
	Sebi122g00117	724	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	417	517	-	-
	Sebi122g00117	724	MobiDBLite	consensus disorder prediction	243	310	-	-
	Sebi122g00117	724	CDD	STK_N	8	152	-	-
	Sebi122g00117	724	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	563	575	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi122g00117	Sebi-Chr122	1615032	1618976	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi122g00117	9	713	Receptor kinase-like Gene Family	AT1G17540	48.808	0.0	617

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Sebi122g00117		PK_Tyr_Ser-Thr	1.9e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi122g00117	-		-	gmx:100799611	923.309