Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00101 ATGGGGAATCAGAAGCAGAAATGGACGCAGGATGAAGAAGAAGCGCTTATCGCGGGTGTGGAAAAGCATGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTCAATTCGCCCCTTTCCTCACTTCCCGTTCTAACATCGACCTCAAGGTGCTACTGCACTGCTAA 168 0.4881 MGNQKQKWTQDEEEALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKVLLHC 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00101 55 CDD SANT_TRF 6 50 - -
Sebi122g00101 55 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sebi122g00101 55 Gene3D - 2 51 - -
Sebi122g00101 55 PANTHER SINGLE MYB HISTONE 4 1 50 IPR044597 GO:0003691
Sebi122g00101 55 SUPERFAMILY Homeodomain-like 2 50 IPR009057 -
Sebi122g00101 55 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Sebi122g00101 55 FunFam Telomere repeat-binding factor 1 2 52 - -
Sebi122g00101 55 Pfam Myb-like DNA-binding domain 5 33 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00101 Sebi-Chr122 1348633 1348800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00101 1 50 Single Myb Histone (SMH) Gene Family AT1G17520 78.000 4.49e-23 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi122g00101 Myb_DNA-binding 3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00101 K09422 - gmx:780537 107.457