Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00099 ATGGGATTACAAGAAAATCTTCTCCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATCGTTCCCTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAATCTGGAACTGGGAAGACTGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCTCCAACAAGGGAGCTAGCACAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAAGTCCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCAGGACGTGTGTTTGACATGCTGAGGAGGCAGTCTCTTCGCCCAGATTGCATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTCAAGGATCAGATCTATGACATATTCCAGCTACTGCCAGGGAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGCGATGAACTGACCCTGGAGGGTATCAAGCAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTAGAGACACTATGTGACCTCTATGAGACTCTGGCTATCACCCAGAGTGTCATTTTCGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAACGATCACACAGTGTCAGCCACCCATGGTGACATGGACCAAAACACTAGGGATATCATCATGCGTGAATTCCGGTCTGGCTCTTCTCGAGTTCTGATTACCACTGACCTCTTGGCCCGTGGTATAGATGTGCAGCAAGTTTCTCTGGTCATAAACTATGATCTCCCAACCCAACCTGAGAACTATCTCCACCGCATAGGGCGTAGTGGTCGTTTTGGAAGGAAAGGTGTTGCTATAAACTTTGTTACATTGGATGATGCTAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGTCTGTAGAGGAGCTCCCATCAAATGTTGCTGATCTTCTCTGA 1110 0.4649 MGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVSVEELPSNVADLL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00099 369 Gene3D - 205 369 IPR027417 -
Sebi122g00099 369 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 353 - -
Sebi122g00099 369 CDD DEADc_EIF4A 1 198 - -
Sebi122g00099 369 Pfam DEAD/DEAH box helicase 21 182 IPR011545 GO:0003676|GO:0005524
Sebi122g00099 369 Gene3D - 1 204 IPR027417 -
Sebi122g00099 369 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 197 IPR014001 -
Sebi122g00099 369 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 143 151 IPR000629 -
Sebi122g00099 369 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 1 24 IPR014014 GO:0003724
Sebi122g00099 369 FunFam Eukaryotic initiation factor 4A-II 1 203 - -
Sebi122g00099 369 SMART ultradead3 15 212 IPR014001 -
Sebi122g00099 369 FunFam Eukaryotic initiation factor 4A-III 204 369 - -
Sebi122g00099 369 SMART helicmild6 249 330 IPR001650 -
Sebi122g00099 369 Pfam Helicase conserved C-terminal domain 222 330 IPR001650 -
Sebi122g00099 369 CDD SF2_C_DEAD 209 339 - -
Sebi122g00099 369 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 208 369 IPR001650 -
Sebi122g00099 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 350 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00099 Sebi-Chr122 1327890 1329883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00099 1 369 Eukaryotic Initiation Factors Gene Family AT1G72730 92.141 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00099 K03257 - gmx:100809918 723.391