Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00056 ATGGAGGAAACGCCTAAGCTTCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTATTCATCTTTTTTTCCCTTCAATTTGAGCTCAATATTTCAGTGCATATGTTCAACTGGAGAGCCTGCTTATGTGACCATCAAGATAGACAACAACAAGGTTGCAAAAACAAGCCAAGAAACCAATTGTGTCTGGAACCAAACCTTTCAGATTCATTGTGCTCATCCACCTGATTCAACTATCACCGTTACACTGAAAACATCATGTTCCATATTGGGTAAATTCCATATCCAGGCCCATCAGCTATTGAAGGAACCAAATTTGATCAATGGCTTCTTCCCTCTCCTCATGGAAAATGGAAAACCACACCCAAAACTTAAATTAAAGTTTTTATTATGGTTCAAGCCAGCAGAATTGGCACCTAGTTGGGCAGAGGTACTAACCAATGGGGAATTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGTCATGTCAAACTTTATCATGATGCTCATCATTCTCCTGCTTTCCAACCTCCTTTTGATCTATGTGGAACTCCAAAAAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTACATAGTTTATATTGCTGGCTGGTCCTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCATACAGAAATCCCACATGCTAGAGGAATAAAGCTGGGTGAGTTACTTAAGAAGAAGGCAGAGGAAGGAGTTGCTGTGAGAGTTATGCTTTGGGATGATGAAACATCTTTGCCCTTTATTAAGAACAAAGGTGTAATGAACACCCATGATGAGGATGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGGAAGTGTCCAAGGTTACACAATAAGTTCCCCACACTATTTGCTCACCATCAAAAGACTATAACTGTGGATATTGCTGAACACAAATCTGTTAGTGACAGAGAACTTGTGAGCTTTGTGGGTGGGTTAGATTTGTGTGATGGCCGGTATGATACAGAACAACATTCATTGTTTCAAACACTCATTAAGGAATCCCATTGTTATGACTTTTACCAAACAAACATTGGAGGAGCTAACCTCAACAAAGGAGGGCCAAGAGTGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATATGCTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAGTCCCTTCTAGCACCTTGCTGAATCTTATGCCTCCTACAAGCCCAAGCACTTCCATAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTTTCTGTTGGCAAGTTGTTTGGGAAGTTCACTGTGGATGTGGAGAGAAGCATCCATGAAGCATATGTTGAAGCAATAAGGCGTGCTGAAAGGTTTATCTACATTGAAAACCAATATTTCATTGGGGGGTGCCATTTATGGGAGAAAGATAAGCACTGTGGCTGCACAAATCTAATTCCCATTGAAATTGCACTCAAGGTGGTTAATAAGATCAAAGCAAAGGAGAGGTTTGCAGTGTACATAGTGATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGGGGAACCAGGACACCCAAGAGACTACTTGAATTTCTTCTGTCTTGCAAATAGGGAGCACAAGGGAAATGGGGAGTATCTTCCACCAGATTCTCCTCATCCTGAAACACAATATTGGAATGCCCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAAGCTCATGATAGTTTTGTTGTATGTGCCACCAGTGGACGACCTATACATATTAATAGGATCAGCTAATGTGAACCAAAGATCAATGGACGGGCAAAGGGACACTGAGATTGCCTTAGGATGCTACCAGTCTCAATTTAAAACCATATCAGAAAGTTTAAAACCATGTGTGCTTGGTGATGTTCATGCATACAGAATGTCACTATGGTATGAGCACACCAATAGTGCTGAGGAATTGTTGTTAGAGCCAGAAAGTTTGGAATGTGTGCAGAGAATGCGCTCAATAGGAGACCAAATGTGGGGAATCTACAGCAGTGCAGAAATTGTGGACATGGAAGGTGTTCACCTTGTTACTTACCCTGTTAAGGTAACACAAGAAGGGTATGTGAAGGCCCTCACTAATGGAATTCATTTTCCTGATACAAATTCTCTAGTGAAGGGCAAGAGATCTAATATGTTGTCCCCTAACTTTACCACTTAA 2334 0.413 MEETPKLLHGTIEATIFNASPYSSFFPFNLSSIFQCICSTGEPAYVTIKIDNNKVAKTSQETNCVWNQTFQIHCAHPPDSTITVTLKTSCSILGKFHIQAHQLLKEPNLINGFFPLLMENGKPHPKLKLKFLLWFKPAELAPSWAEVLTNGEFQGLRDATFPQRSNCHVKLYHDAHHSPAFQPPFDLCGTPKKLWEDVYKAIEGAKYIVYIAGWSFNPKMVLVRDPHTEIPHARGIKLGELLKKKAEEGVAVRVMLWDDETSLPFIKNKGVMNTHDEDAFAYFNHTKVICRKCPRLHNKFPTLFAHHQKTITVDIAEHKSVSDRELVSFVGGLDLCDGRYDTEQHSLFQTLIKESHCYDFYQTNIGGANLNKGGPRVPWHDAHACVTGEAAWDMLTNFEQRWTKQCDPSFLVPSSTLLNLMPPTSPSTSIERNWKVQVYRSIDHVSVGKLFGKFTVDVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDKHCGCTNLIPIEIALKVVNKIKAKERFAVYIVIPMWPEGVPESEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPRDYLNFFCLANREHKGNGEYLPPDSPHPETQYWNAQKNRRFMVYVHSKLMIVLLYVPPVDDLYILIGSANVNQRSMDGQRDTEIALGCYQSQFKTISESLKPCVLGDVHAYRMSLWYEHTNSAEELLLEPESLECVQRMRSIGDQMWGIYSSAEIVDMEGVHLVTYPVKVTQEGYVKALTNGIHFPDTNSLVKGKRSNMLSPNFTT 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00056 777 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 130 IPR035892 -
Sebi122g00056 777 Gene3D Endonuclease Chain A 426 670 - -
Sebi122g00056 777 Pfam Phospholipase D C terminal 695 766 IPR024632 -
Sebi122g00056 777 SUPERFAMILY Phospholipase D/nuclease 457 707 - -
Sebi122g00056 777 Pfam C2 domain 44 116 IPR000008 -
Sebi122g00056 777 Gene3D Endonuclease Chain A 182 419 - -
Sebi122g00056 777 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 612 646 IPR001736 GO:0003824
Sebi122g00056 777 PANTHER PHOSPHOLIPASE D 7 759 IPR015679 -
Sebi122g00056 777 PIRSF PLD_plant 1 777 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Sebi122g00056 777 Pfam Phospholipase D Active site motif 303 339 IPR001736 GO:0003824
Sebi122g00056 777 SUPERFAMILY Phospholipase D/nuclease 149 412 - -
Sebi122g00056 777 Gene3D C2 domain 38 140 IPR035892 -
Sebi122g00056 777 SMART pld_4 612 646 IPR001736 GO:0003824
Sebi122g00056 777 SMART pld_4 302 339 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00056 Sebi-Chr122 838975 841531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00056 35 777 Phospholipase D Gene Family (Wang group) AT1G55180 61.936 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00056 K01115 - gmx:100812642 1297.34