Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00051 ATGCAATTGAAATATTTGATATGGTACAATGGCTTGCACACTTCTTACTTATCTTCTGTGCCTTCCAAATCTTGGTTATTTTGTCACTTCCCAAAGTATCCAAGATACTACCAATTATCTGAGCCACTATTAGCACAGAAAATTGAAACTAAACAAACACAACTAGGCCATGCTACTCTTCTCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGTAAGGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTACTCTTCTTTCTGAAGATGAAGCACACTTGGCCTACCAAAACTTCTTGCATGAATGGGAATCCCTTGTCAGAGAGAGAAGCAAGAACAATACCAAAAATTTGGTTCTTTGGGCTGTGCTAAAGCTTTCAAGCTCAGCGAGGAGAAGACACTCAACTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATGTAACATGGACTTCAGCATTGCAACTTGTTCTGTCTATTAGTCTCCTTTTTTATGTTGTGGGTTTTGGAGCTCTTCCTGGTTTAGTCCCTCTCCTCATATGTGGACTTCTCAATATCCCATTTGCAAAGATCCTACAAAATTGTCACTCACAATTCATGATTGCACAGGATGTGCGTCTTAGATCAACTTCAGAAATTCTAAACAGCATGAAAATCATCAAGTTACAATCCTGGGAGGAAAAATTCAAGAATTTAGTTTTGTCCCTACGTGCTGAAGAGTTCATATGGTTGTCTAAGGCACAAGTCATGAAAGCTTATATGTCATGTATTTATTGGATGTCTCCTACCATTGTTCCTTCTGTTATTTTCCTCGGATGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTATTGCAACGTTGAAGATGGTTGCAGAACCTGTTAGAAGGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTATCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAACCAGTGATGATAATGGAAGAAGTATAAAGCAATGTTCAGTTAATGCTGTGGAAATTCATGCTGGCAACTTCATCTGGGATCATGAATCAGTGTCCCCAACTTTAACAAATGTGAATTTGGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGGCAGTTGGAGCTGGGAAATCATCTCTTCTGCCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAATAATGCTGACATCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCGCACACTGCTGCTATTCTTTTCAATGACTGTGTCATGAGAGCTTTAAAAGATAAAACAGTCATTCTAGTAACTCATCAAGTGGAGTTTCTTTCTGAAGTTGATACAGTCCTGGTAATGGAGGGAGGAAAAGTTACTCAATCAGGTAATTATGAGGATCTCCTGACAGCTGGCACAACCTTTGAACAACTTGTGAGAGCCCACAGAGAAGTATTAACAGAACTGGATCAAAATAATGAAAGTTCTGAAATTGAGATTATGGCACATCTAGAAGAGTCCCATGGTTTTTATGTCACTAAAAATCAAAATGAGGGGGAGATTTCTACCAAGGGACAACTTACACAAGAAGAAGAAAAAGAGATTGGCTTCTTCAGATTTGAGTATTCTGGACCTTGA 1722 0.3931 MQLKYLIWYNGLHTSYLSSVPSKSWLFCHFPKYPRYYQLSEPLLAQKIETKQTQLGHATLLSKLTFSWVNSLLSKGYSKPLALEDIPTLLSEDEAHLAYQNFLHEWESLVRERSKNNTKNLVLWAVLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHVTWTSALQLVLSISLLFYVVGFGALPGLVPLLICGLLNIPFAKILQNCHSQFMIAQDVRLRSTSEILNSMKIIKLQSWEEKFKNLVLSLRAEEFIWLSKAQVMKAYMSCIYWMSPTIVPSVIFLGCALFNSAPLNAETIFTVIATLKMVAEPVRRIPEALSIMIQVKVSFDRLNTFLLDEELTSDDNGRSIKQCSVNAVEIHAGNFIWDHESVSPTLTNVNLEIKWGQKIAVCGQLELGNHLFCQRGINMSGGQKQRIQLARAVYNNADIYLLDDPFSAVDAHTAAILFNDCVMRALKDKTVILVTHQVEFLSEVDTVLVMEGGKVTQSGNYEDLLTAGTTFEQLVRAHREVLTELDQNNESSEIEIMAHLEESHGFYVTKNQNEGEISTKGQLTQEEEKEIGFFRFEYSGP 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00051 573 Gene3D - 396 533 IPR027417 -
Sebi122g00051 573 FunFam ABC transporter C family member 10 118 342 - -
Sebi122g00051 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 508 IPR027417 -
Sebi122g00051 573 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 228 509 IPR003439 GO:0005524
Sebi122g00051 573 Pfam ABC transporter 406 438 IPR003439 GO:0005524
Sebi122g00051 573 SUPERFAMILY ABC transporter transmembrane region 112 340 IPR036640 GO:0005524|GO:0016020
Sebi122g00051 573 Coils Coil 514 534 - -
Sebi122g00051 573 Pfam ABC transporter transmembrane region 116 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00051 573 CDD ABC_6TM_ABCC_D1 126 334 IPR044746 GO:0140359
Sebi122g00051 573 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00051 573 ProSitePatterns ABC transporters family signature. 411 425 IPR017871 GO:0005524|GO:0016887
Sebi122g00051 573 Gene3D ABC transporter type 1, transmembrane domain 98 348 IPR036640 GO:0005524|GO:0016020
Sebi122g00051 573 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 57 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00051 Sebi-Chr122 732942 735879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00051 406 500 Calmodulin-binding Proteins AT2G36910 34.737 5.81e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00051 - - lja:Lj3g3v2693530.1 452.981