Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00049 ATGATTGAGTCACTTCGTGCTAGTGAATTCAAGTGGTTGGCTGAGACACAGTTCACAAAGGCTTTGGGATCTGTACTGTATTTTATTTCTCCAACTGTTATTTGTGCAGTTGTTTTATTAGGAAGCACCCTCTTTAGGACAGCTCCATTAAATGCTGGTACCATCTTCACAGTTCTTGCTACATTGAGAAGCTTGGCAGAACCTGTCAGATTCATACCTGAGGCTGTTTCTGTGGTTATCCAAGTTAAAGTCTCATTTGACAGGCTAAACACTTTTCTCCTTGATGATGAGCTAAAGACTTACCAAAAGAGGAGCATTTCAATGTCAAAATCAGATAAATGCATTGAAATAGAAGCAGCTATTTTCAGCTGGGATGAGGAATCAGTGTCCCCTACTTTGAGAGACATCAATTTATTATGCATCAAACTTGGGCAAAAGGTTAATTTGCATGGAGCAGTAGCCTATGTTTCTCAAACTTCTTGGATCCAGAGTGGGACAGTTCGTCAGAGAGGGCTTAACTTGAGTGGAGGACAGAAGCAAAGAGTTCAACTTGCCCGTGCTGTTTACAATGATGCTGATATATATCTTCTTGATGACCCTTTCAGTGCAGTAGATGCACACACTGCAGCAATTCTATTCCATGATTGTGTCATGAGTGCTCTCAGAGAGAAAACAGTCATCCTAGTGACCCACCAAGTAGAGTTTCTAACAGAAGTTGATAAAATTCTGGTTATAGAGGGTGGGCATATTACTCAAGAAGGAAGCCATGAGGAGTTATCAACATCTAGGGCAACCTTTGAACAACTTATTAATGCTCATAGAGATGCAATAACTGTGTTGGGTACACATAGTCAAAACCAAGAAAAATGTCAAGAAATAAATAGAGTTAATAATGATGAACAACACCGTGGATGTGATCCCCTTAACAAAATTAGTGATGGAGAGATATGTGAGACAAGAATTGAAGGGCAACAACTTACTCAAGAAGAGCAGAGAGAAACGGGAACTGCTGGATGGAAACTGTTCCTGGATTATGTCATGATCTCCAAGGGACAGCTTTTTATGTGTTTAAGCTTACTAGCTCTGATATGTTTTGCTGCTCTTTTGGCTGCTTCATCTTATTGGCTTGCTATAGCCAGTGAAATTCCAAGCATTAGTAGTGGCATGCTGCTGGGAGTTTACACTGCATTGGCACTCTCTAGTGCAACGTTTGTTTACCTGAGGTCTTTCTTTGTAGCTCATCTTGGATTGAAGGCTTCTAAAACCTTCTTCTCAGGTTTCACTTCTGCCATTTTCAATGCTCCTATGTCATTCTTTGACTCAACTCCTGTTGGAAGAATTTTGACTCGAGCTTCATCAGATATGGCTACTTTGGATTTTGATCTACCTTTTGCCATAGTCTTTGTAATACAAACTGGAGTTGAACTTCTAACAGGAATTGGTATTATGTCTTCAGTCACATGGCAAGTTCTTATAGTTGCCATTCTAACTGCAGTAGCAGGAAACTACATTAAGGGCTACTATGAAGCCACTACAAGGGAACTAGTAAGAATTAATGGAACAACAACAGCTCCAATTGTGAATTGTGCAACGGAGACATCAGCAGGAGTGGTAACAGTAAGAGCTTTCAAGATGGGGGACAGGTTTTTCCAAACATTCCTACACCTAGTTGACACAGATGCTACACTTCTCTTGCATACTAAAGCTGCTCTGGAGTGGGTAGTGACAAGAGTTGAAACACTTCAAAATTTGATCCTTTTCACTGCAGCTTCTCTATTTGTGTTTCTTCCCAGGGGATCTATAGCTCCAGGTAACATTAAACTCATGATACTATTCTACTACATTTGTGCACAGATCCCAGATGTATTTACTAAGTGGTCTTGTAACTTATCAAACTTCAGCATCTCTGTTGAAAGAATCAAGCAATTCATGCAGATACCACAAGAGCCTCCAAAAATATTGGAGGATAAAAGGCCCACATCTTCATGGCCTTCCAAGGGCAGGATAGAGCTTCAAGCTTTGAAGGTTAGATATCGTCCAAATGCTCCTTTAGTTCTGAATGGAATCACTTGTACCTTCAAAGAAGGGACTAGAGTAGGAGTTGTAGGAAGGACTGGGAGTGGAAAAACAACACTTTTAAGTGGCATTGTTTCGTTTGGCCTGAAGGATTTAAGAATGAAGCTAAGCATCATCCCTCAAGAACCAATTCTATTCAAGGGGAGTGTCCGAACCAACTTGGATCCACTAGACCAATTCTCTGATGATGAGATATGGAAGGTTTTAGAGATGTGTCAACTCAAGGAGGCTATTTCTGGACTACCATATCTTTTGGACTCATCAGTGAGTAATGAAGGTGAAAATTGGAGTGTGGGTCAACGCCAATTATTTTGCCTTGGAAGAGTCCTTCTAAAAAGGAATAGAATTCTAGTTTGGATGAAGCAACGGCTTCCATTGATTCTGCAAACAGATGCCATTTTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTCTTTCTTTTGGCAACCTGGTGGAGTATGATGAACCTTCAAAACTTATGGAGGACAACTCTTCTTCATTCTCAAAGCTTGTAGCTGAATACTGGTCCAGCTGCAGAAGGAACTAA 2685 0.4041 MIESLRASEFKWLAETQFTKALGSVLYFISPTVICAVVLLGSTLFRTAPLNAGTIFTVLATLRSLAEPVRFIPEAVSVVIQVKVSFDRLNTFLLDDELKTYQKRSISMSKSDKCIEIEAAIFSWDEESVSPTLRDINLLCIKLGQKVNLHGAVAYVSQTSWIQSGTVRQRGLNLSGGQKQRVQLARAVYNDADIYLLDDPFSAVDAHTAAILFHDCVMSALREKTVILVTHQVEFLTEVDKILVIEGGHITQEGSHEELSTSRATFEQLINAHRDAITVLGTHSQNQEKCQEINRVNNDEQHRGCDPLNKISDGEICETRIEGQQLTQEEQRETGTAGWKLFLDYVMISKGQLFMCLSLLALICFAALLAASSYWLAIASEIPSISSGMLLGVYTALALSSATFVYLRSFFVAHLGLKASKTFFSGFTSAIFNAPMSFFDSTPVGRILTRASSDMATLDFDLPFAIVFVIQTGVELLTGIGIMSSVTWQVLIVAILTAVAGNYIKGYYEATTRELVRINGTTTAPIVNCATETSAGVVTVRAFKMGDRFFQTFLHLVDTDATLLLHTKAALEWVVTRVETLQNLILFTAASLFVFLPRGSIAPGNIKLMILFYYICAQIPDVFTKWSCNLSNFSISVERIKQFMQIPQEPPKILEDKRPTSSWPSKGRIELQALKVRYRPNAPLVLNGITCTFKEGTRVGVVGRTGSGKTTLLSGIVSFGLKDLRMKLSIIPQEPILFKGSVRTNLDPLDQFSDDEIWKVLEMCQLKEAISGLPYLLDSSVSNEGENWSVGQRQLFCLGRVLLKRNRILVWMKQRLPLILQTDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSFGNLVEYDEPSKLMEDNSSSFSKLVAEYWSSCRRN 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00049 894 Gene3D ABC transporter type 1, transmembrane domain 318 650 IPR036640 GO:0005524|GO:0016020
Sebi122g00049 894 Pfam ABC transporter 686 810 IPR003439 GO:0005524
Sebi122g00049 894 FunFam ABC transporter C family member 5 318 650 - -
Sebi122g00049 894 FunFam Multidrug resistance-associated protein member 4 714 887 - -
Sebi122g00049 894 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 169 - -
Sebi122g00049 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 877 IPR027417 -
Sebi122g00049 894 Gene3D - 167 298 IPR027417 -
Sebi122g00049 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 272 IPR027417 -
Sebi122g00049 894 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 272 IPR003439 GO:0005524
Sebi122g00049 894 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
Sebi122g00049 894 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 671 885 IPR003439 GO:0005524
Sebi122g00049 894 Gene3D - 653 886 IPR027417 -
Sebi122g00049 894 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 81 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00049 894 SUPERFAMILY ABC transporter transmembrane region 17 93 IPR036640 GO:0005524|GO:0016020
Sebi122g00049 894 Pfam ABC transporter 124 201 IPR003439 GO:0005524
Sebi122g00049 894 CDD ABCC_MRP_domain2 667 869 - -
Sebi122g00049 894 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 357 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00049 894 Gene3D ABC transporter type 1, transmembrane domain 1 97 IPR036640 GO:0005524|GO:0016020
Sebi122g00049 894 SUPERFAMILY ABC transporter transmembrane region 343 651 IPR036640 GO:0005524|GO:0016020
Sebi122g00049 894 CDD ABC_6TM_ABCC_D2 355 644 IPR044726 GO:0140359
Sebi122g00049 894 Pfam ABC transporter transmembrane region 356 612 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00049 Sebi-Chr122 694416 698529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00049 667 884 Calmodulin-binding Proteins AT2G36910 26.337 2.86e-15 79.0