Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00048 ATGAACTTGTATTATTTTTCTGTCACTGGATATGCAGGGGATTTCTCATGGTCTTGTCTGGGAGATTTTGACTTATATTCTTTATGCTCTCAAAGAAGCATCATAGACATTGTAAATCTACTTTTTGTCTGTGCCTTCTACACGTCTCTGCTTATCACTTTGATCAGAAGATGTTCTGAAAGTGGTGGCCATAGAAAGAACTGGATTTTCCCAGTTGTCTCAGTCTGCTGTGCTCTCATTAGCATTGCACATTTTAGCAATGGCCTTTGGAATCTCATAGCCAAAACTAGTAACTTTAAGCAGCTGGGCTGGTTAGTTTGTATTGTGAGAGCTTTTGTTTGGATTTCTTATGCAGTTTCTTTGCTTGTTCAGAGATACAAATGGCTAAAAATTCTGAACTTTGTGTGGTGGGCATCTTCCTGTGTATTGTTTTCAGCTCTCAACATTGAAACTCTGTTCAAAGAGCATGCAGTTGAAGTTTTTGATATGGTACAATGGCTTGTACACTTCTTACTTCTCTTCTGTGCCTTCCAAAATCTTGGTTATTTTATCACTTCCCAAAGTATCCAAGATACTACCAATTTATCTGAGCCACTATTAGCTCAGAAAATTGAAACTAAACAAACACAACTTGGCGATGCTACTCTTCTCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTGAGTCTGGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTTCTCTTCTTTCTGAAGATGAAGCACGCTTGGCCTACCAAAACTTCTTGCATGAATGGGAATCCCTTGTCAGAGAGAGAAGCAAGAACAATACCAAAAATTTGGTTCTTTGGGCTGTGGTTAGAACTTACTTCAAAGAAAACATATTAATAGCATTTTACGCATTACTAAGAACTATTTCTGTTGTTGTTTCTCCTCTAATACTATATGCTTTTGTAAACTACTCAAATAGCACTGAGGCAAATCTCAAAGAAGGTTTTTCCATAGTGGGTTTTCTTGTTCTCACCAAAGTGTTTGAGTCTTTGCCCCAAAGACACTATTGTTTTGGTTCAAGGAGGTCAGGGATGAAAATGAGATCAGCTCTAATGGTAGCAGTCTATGAAAAACAGCTAAAGCTTTCAAGCTCAGCGAGGAGAAGACACTCAACTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATGTAACATGGACTTCAGCATTGCAACTTGTTCTGTCTATTAGTCTCCTTTTTTATGTTGTGGGTTTTGGAGCTCTTCCTGGTTTAGTCCCTCTCCTCATATGTGGACTTCTCAATATCCCATTTGCAAAGATCCTACAAAATTGTCACTCACAATTCATGATTGCACAGGATGTGCGTCTTAGATCAACTTCAGAAATTCTAAACAGCATGAAAATCATCAAGTTACAATCCTGGGAGGAAAAATTCAAGAATTTAGTTTTGTCCCTACGTGCTGAAGAGTTCATATGGTTGTCTAAGGCACAAATCATGAAAGCTTATATGTCATGTCTTTATTGGATGTCTCCTACCATTGTTCCTTCTGTTATTTTCCTCGGATGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACCTTGAGGATGGTTGCAGAACCTGTTAGATTGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAAATAGTGATGATAATGGAAGAAACATAAAGCAATGTTCAGTTAATGCTGTGGAAATTCAAGCTGGCAACTTTATTTGGGATCATGAATCAGTGTCCCATACTTTAACAAATGTGAATTTGGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGATATTCCTAAGATTTCAGGAAAGGTTAATGTTGGAGGCACCCTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGGAAGCCAATGGACAAAACAAGATATGAGAATGCCATTAGAGTTTGTGCCTTGGATAAGGATATTAATGATTTTAGCCATGGTGATATTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAATGATGCTGACATCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCACACACTGCTGCTATTCTTTTCAATGACTGTGTCATGAGAGCTTTAAAAGATAAAACAGTCATTCTAGTAACTCATCAAGTGGAGTTTCTTTCTGAAGTTGATACAATCCTGGTAATGCAAGGAGGAAAAGTTGCTCAATTAGGTAATTATGAAGATCTCCTGACAGCTGGCACAGCCTTTGAACAACTTGTGAGAGCCCACAAAGAAGTATTAACTGAACTGGATCAAAATAATAAAAGTTCTGAATTTGAGATTATGGCACATCTAGAAGAGTCCCATGGTTTTTATGTCAATAAAAATCAAAGTGAGGGGGAGACTTCTACAAAGGGACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATATTGGCTGGAAGCCATTCTGGGATTATATTTCTTTTTCTAGGGGATCATCCATGTTGTGTTTGATCTTATTAGTTCAATCTGCTTTTGTTTCTTTGCAGACTGCATCATCTATTTGGCTTGCTTTTGCCATTGAAATTCCAAAGTTAACTAGTGGCACCTTGATTGGAGTTTATTCACTAATTTCATTTATTAGTGCTGCGTTTGTATATCTAAGGTCTCTCTTGGTTGCACATCTTGGACTAAAAGCTTCTACAACCATCTTCTCAAGTTTCACTACGGCTATCTTCAATGCTCCTATGCTATTCTTTGACTCGACACCTGTTGGAAGGATTTTAACCCGAGCTTCTTCAGATTTGAGTATTTTGGACCTTGATGTACCTTATTCTATCACTTTTGTAGTATTTGTGGCAATTGAAATTCTGGTTACTATTTGTGCCATGGTTTCCATCACATGGCAAGTTCTCATTGTAGCTATTCCAGCTATGGTCGCATCAAAATATATTCAGGGATATTATCAAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCAGCTGAGACGTCACTTGGAGTGGTTACTGTAAGAACATTCAACATGGTAGACAGATTTTTCAAACACTACCTAAAGCTTGTGGACACAGATGCAACATTGTTCTTTCATTCTAATGTGGCAATGGAATGGTTAGTTTTGAGGATTGAAGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTATCCTACTTCCTAAGGGATACGTGCCTTCAGGTCTTGTGGGGCTATCTCTTTCTTATGCGTTCACATTGACAGCATCCCAAATATTTTGGAATAGATGCTTTTGCAACTTATCAAATCAAATTATCTCAGTTGAAAGAATCAAGCAATTTATTCACATACCAGTGGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCAAGAACTAGAGATTAGATATCGTCCAAATGCTCCATTGGTCCTTAAGGGTATCACTTGTACATTTAAAGAAGGGAATAGAGTAGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAGGTGCTTTGTTTCGCTTAGTTGAGCCTTCAGGAGGTGCGATTCTTATTGATGGGATTAACATTTGCTCAATTGGGTTCAAGGAATTGAGAATGAAGCTAAGCATTATTCCTCAGGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTATGCAGACGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACAATCAGCACGCTCCCAAGTCTCTTGGATTCTTCTGTAAGCGATGAAGGTGGAAATTGGAGCTTGGGACAGCGACAACTATTTTGCCTTGCAAGAGTACTACTTAAGAGGAACAGAATTCTTGTTCTAGATGAAGCTACTGCATCCATTGACACTGCAACAGATGCCATTCTACAACGAGTAATTGAAAAAGAATTTGCAAATTGCACAGTTATAACTGTGGCACACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTAGTGGAATATGATCAGCCTTCAAAACTTATGGATACAAACTCTTCATTCTCTAGGTTGGTCGCTGAATATTGGTCCAGCTGCAGGAAGAATTCCTCCCCAACTATTAGCAGGCAGTGA 4407 0.3898 MNLYYFSVTGYAGDFSWSCLGDFDLYSLCSQRSIIDIVNLLFVCAFYTSLLITLIRRCSESGGHRKNWIFPVVSVCCALISIAHFSNGLWNLIAKTSNFKQLGWLVCIVRAFVWISYAVSLLVQRYKWLKILNFVWWASSCVLFSALNIETLFKEHAVEVFDMVQWLVHFLLLFCAFQNLGYFITSQSIQDTTNLSEPLLAQKIETKQTQLGDATLLSKLTFSWVNSLLSLGYSKPLALEDIPSLLSEDEARLAYQNFLHEWESLVRERSKNNTKNLVLWAVVRTYFKENILIAFYALLRTISVVVSPLILYAFVNYSNSTEANLKEGFSIVGFLVLTKVFESLPQRHYCFGSRRSGMKMRSALMVAVYEKQLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHVTWTSALQLVLSISLLFYVVGFGALPGLVPLLICGLLNIPFAKILQNCHSQFMIAQDVRLRSTSEILNSMKIIKLQSWEEKFKNLVLSLRAEEFIWLSKAQIMKAYMSCLYWMSPTIVPSVIFLGCALFNSAPLNAETIFTVLATLRMVAEPVRLIPEALSIMIQVKVSFDRLNTFLLDEELNSDDNGRNIKQCSVNAVEIQAGNFIWDHESVSHTLTNVNLEIKWGQKIAVCGPVGAGKSSLLYAILGDIPKISGKVNVGGTLAYVSQTSWIQSGTVRDNILFGKPMDKTRYENAIRVCALDKDINDFSHGDITEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMRALKDKTVILVTHQVEFLSEVDTILVMQGGKVAQLGNYEDLLTAGTAFEQLVRAHKEVLTELDQNNKSSEFEIMAHLEESHGFYVNKNQSEGETSTKGQLTQEEEKEIGDIGWKPFWDYISFSRGSSMLCLILLVQSAFVSLQTASSIWLAFAIEIPKLTSGTLIGVYSLISFISAAFVYLRSLLVAHLGLKASTTIFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDLDVPYSITFVVFVAIEILVTICAMVSITWQVLIVAIPAMVASKYIQGYYQASARELIRINGTTKAPVMNFAAETSLGVVTVRTFNMVDRFFKHYLKLVDTDATLFFHSNVAMEWLVLRIEVLQNLTVFTAALLLILLPKGYVPSGLVGLSLSYAFTLTASQIFWNRCFCNLSNQIISVERIKQFIHIPVEPPAIVEDNRPPSSWPSKGRIDLQELEIRYRPNAPLVLKGITCTFKEGNRVGVVGRTGSGKSTLIGALFRLVEPSGGAILIDGINICSIGFKELRMKLSIIPQEPTLFKGSIRTNLDPLGLYADDEIWKALEKCQLKETISTLPSLLDSSVSDEGGNWSLGQRQLFCLARVLLKRNRILVLDEATASIDTATDAILQRVIEKEFANCTVITVAHRVPTVIDSDMVMVLSYGKLVEYDQPSKLMDTNSSFSRLVAEYWSSCRKNSSPTISRQ 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00048 1468 SMART AAA_5 1244 1437 IPR003593 GO:0016887
Sebi122g00048 1468 SMART AAA_5 633 806 IPR003593 GO:0016887
Sebi122g00048 1468 Gene3D - 614 855 IPR027417 -
Sebi122g00048 1468 FunFam ABC transporter C family member 5 867 1199 - -
Sebi122g00048 1468 CDD ABC_6TM_ABCC_D2 903 1193 IPR044726 GO:0140359
Sebi122g00048 1468 Pfam ABC transporter 624 758 IPR003439 GO:0005524
Sebi122g00048 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00048 1468 Gene3D ABC transporter type 1, transmembrane domain 867 1198 IPR036640 GO:0005524|GO:0016020
Sebi122g00048 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1451 IPR027417 -
Sebi122g00048 1468 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Sebi122g00048 1468 Gene3D - 1201 1452 IPR027417 -
Sebi122g00048 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00048 1468 FunFam ABC transporter C family member 10 274 588 - -
Sebi122g00048 1468 FunFam ABC transporter C family member 3 1201 1452 - -
Sebi122g00048 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Sebi122g00048 1468 CDD ABCC_MRP_domain1 606 806 - -
Sebi122g00048 1468 FunFam Multidrug resistance protein associated1 585 848 - -
Sebi122g00048 1468 ProSitePatterns ABC transporters family signature. 731 745 IPR017871 GO:0005524|GO:0016887
Sebi122g00048 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 214 1454 - -
Sebi122g00048 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 608 829 IPR003439 GO:0005524
Sebi122g00048 1468 Pfam ABC transporter transmembrane region 293 552 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00048 1468 Pfam ABC transporter transmembrane region 935 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi122g00048 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 828 IPR027417 -
Sebi122g00048 1468 Gene3D ABC transporter type 1, transmembrane domain 258 594 IPR036640 GO:0005524|GO:0016020
Sebi122g00048 1468 SUPERFAMILY ABC transporter transmembrane region 279 586 IPR036640 GO:0005524|GO:0016020
Sebi122g00048 1468 CDD ABC_6TM_ABCC_D1 292 580 IPR044746 GO:0140359
Sebi122g00048 1468 SUPERFAMILY ABC transporter transmembrane region 889 1200 IPR036640 GO:0005524|GO:0016020
Sebi122g00048 1468 CDD ABCC_MRP_domain2 1216 1436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00048 Sebi-Chr122 684796 692229 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00048 606 820 Calmodulin-binding Proteins AT2G36910 29.694 3.04e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00048 - - gmx:100804798 2325.44