Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00042 ATGAAGCCCCACTTTCCTGAACAAGAACAACTCAAATGCCCACGTTGTGATTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACAAAAGGTGGTGCTCTGAGAAACATCCCTGTTGGAGGTGGAAGCAGAAAGAGCACTAAACGTTCATCAAGCTCCAAACGTTCCACATCATCTTCCTCATCACCATCAATCTCCTCTGCAGCCCCAGCTACAGAGGCTGACCCGACCCGGGTTTACACTGGCCCGGTTGATCAAGACCAACAACAGGTGCTAAACACTGGTGGGAGTTTCAGTTCCCTTTTGGCATCAACTGGGCATTTTGGGAGCCTCTTTGAGGGTATGAATTCAAGTGGGTCAAGTCTAAAAATGGTGCAAATGGGTGAATTTGGGGAGAACATGAGAAGTTATGACCCGGTTGTGAATTCGGATTCGGGTAGTAACCCGGGAGTGGAGATGCAGAGTAATGGTAGCTCAGAGAGCTTACTGGGTATGCAAAATGGTGATTCAAGCTGCTGGAATGGTAGTAGCCATGGTTGGTCTGATCTTGCAATATACACACCCAGCTCAGGCTTTCAGTAG 633 0.4771 MKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSSSKRSTSSSSSPSISSAAPATEADPTRVYTGPVDQDQQQVLNTGGSFSSLLASTGHFGSLFEGMNSSGSSLKMVQMGEFGENMRSYDPVVNSDSGSNPGVEMQSNGSSESLLGMQNGDSSCWNGSSHGWSDLAIYTPSSGFQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00042 210 ProSiteProfiles Zinc finger Dof-type profile. 11 65 IPR003851 GO:0003677|GO:0006355
Sebi122g00042 210 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 166 IPR045174 GO:0003700|GO:0006355
Sebi122g00042 210 ProSitePatterns Zinc finger Dof-type signature. 13 49 IPR003851 GO:0003677|GO:0006355
Sebi122g00042 210 MobiDBLite consensus disorder prediction 60 88 - -
Sebi122g00042 210 MobiDBLite consensus disorder prediction 52 98 - -
Sebi122g00042 210 Pfam Dof domain, zinc finger 9 65 IPR003851 GO:0003677|GO:0006355
Sebi122g00042 210 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00042 Sebi-Chr122 582377 583009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00042 2 129 C2C2-Dof Transcription Factor Family AT1G51700 58.865 1.26e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi122g00042 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00042 - - gmx:100798927 277.33