Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00022 ATGGATGGTCTGAATTGGGGTATGAACACATCACAAATCCTGTGGAGTACTCAGCAGCAACAAGATTTTGATGGAGGCTACCCCATATCCAACTTAAGTGCAAGTGTTCTTAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATACACATTCAAATTCTGAAAGGGTGATTTATCAGTCAGCAGTTACTACCACCAGTTCAGAGATAATAGATGTGATGGCCAACACCAACACAAACCTGTCAGCAATGGTGACAGTGAAATCACTCTCAGGAGCTGGAGCCAGCTGGGGAGAAGCTTTAACTTCTCAATCATGTCCGTCCCTTTCAGTCAATGGACCTTACAGTATGAACCCAATTAGGAACTACATGCCAGATTTCAACATGGCCCACCAACAACAACTTATCAATGGCTCACAAAATGGGAAAGGGACCGGTTCTCATGACTCTTTTGATTGTTTGCTTTCAGCTACTAATAGCAACACAGACACTTCTGTGGAAGATGATGGGATTTCAATGATTTTATCTGACTGTGGAAACTTATGGAACTTCAGTTATGGCAGTGCAGCTTCCTCTGCTGAATCTGAGAGCAATGCTTCCAATGCTAAAAACAAACACATGCAACGTCCAGTCAATGAACTTGATGAAACAGCAGTGTCTCAAAGCTCCTCAGATCAATATGTCAATCAAGGAAAAACAATAGAATCCAAGGCTAATTGCTCACAATCTGAGCTGATCAAAGTTGGTGTTAGTAGTGATTCATACTTCAGTAGTATTGTTCAGAATTCTTCTCCAAGTGAAGGTGGTTTCAGACTCATCTCAGATAATAATCCAACAAAATGCAAGAAACCAAGATGGGATAAGGTTCCTTCTTCATCTAACATCAATTTCCAGCAGCCAGATTCATCAATGTTGTCATCTTCCATTCATCAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAATTTGGGGTTGGAGGTGATTGAAAAGCCAAAGAGGAAGAATGTGAGGATATCATCTGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTACAGAAGCTTGTGCCAGGGGGAAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTGGAAAGTCTAGGGAACAAGGTGAATGCAATGAATTGTCCTCCTACTAGCATTGCTTTCTCTTTCAACCCTTCTTTTCCCATGCAAAATCCATCACTCCCAGGGTTGAAGTGA 1335 0.4232 MDGLNWGMNTSQILWSTQQQQDFDGGYPISNLSASVLNQIQEMQKAQTGHTHSNSERVIYQSAVTTTSSEIIDVMANTNTNLSAMVTVKSLSGAGASWGEALTSQSCPSLSVNGPYSMNPIRNYMPDFNMAHQQQLINGSQNGKGTGSHDSFDCLLSATNSNTDTSVEDDGISMILSDCGNLWNFSYGSAASSAESESNASNAKNKHMQRPVNELDETAVSQSSSDQYVNQGKTIESKANCSQSELIKVGVSSDSYFSSIVQNSSPSEGGFRLISDNNPTKCKKPRWDKVPSSSNINFQQPDSSMLSSSIHQEPDPEAIAQMKEMIYRAAAFRPVNLGLEVIEKPKRKNVRISSDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVNAMNCPPTSIAFSFNPSFPMQNPSLPGLK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00022 444 Pfam Helix-loop-helix DNA-binding domain 362 401 IPR011598 GO:0046983
Sebi122g00022 444 FunFam BHLH transcription factor 355 419 - -
Sebi122g00022 444 SMART finulus 358 407 IPR011598 GO:0046983
Sebi122g00022 444 MobiDBLite consensus disorder prediction 268 310 - -
Sebi122g00022 444 MobiDBLite consensus disorder prediction 290 310 - -
Sebi122g00022 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 416 IPR036638 GO:0046983
Sebi122g00022 444 Gene3D - 357 420 IPR036638 GO:0046983
Sebi122g00022 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Sebi122g00022 444 Coils Coil 391 411 - -
Sebi122g00022 444 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 159 432 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00022 Sebi-Chr122 354711 356045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00022 93 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.899 2.58e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi122g00022 HLH 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00022 - - gmx:100793975 572.007