Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi122g00016 ATGATGAGAATGTTGCATTTTCTTTTGGTATTCCTTCCTATTGTGGTTCTCGTGCAAGCTCAGAATCCATCAGGATTCATTAGCATAGATTGTGGGCTACCAGAAAATTCGAGCTATACTGAGCAGACCACAGGCATAAATTATATTTCAGATGCTAAATTCATTGATACTGGTGTTAGTCAGAGTATATCGCCAACTCGTCAACAGCAACTAGCTTATGTGAGGAGCTTTCCTAGTGGAGTCAGAAACTGTTACAGAATAAATGTAGCCAGTGGCACCAAATATTTAATCCGAGCTACTTTCTATTATGGGAACTATGATGGCGTAAATCAGGCCCAGAGCAAAGGGATTCCATTCATTTCAGCTATAGAATTGAGGATTTTGAATAATAATACTTATAACACTAACACAACTGGATTATCGTTGGCACTCCTCGAACGATACGATATTGGTTCCATTACCAACTCAGAATACAGGTACAGTGATGATGTTTATGACCGCGTGTGGACGCCTCTTACATTCAAACAGTGGAAGAAACTAAGCACCACACTTAACCCTGATGATCTAGTTCAGAGTAACTATAGACCACCAGCAGTTGTCATGAGCACTGCTGCTACACCAGTAAATGCCAGTGCTCTTTTTATTTCTCTTGGACTCCAGATAGTGTTATTGACCAACTCTACATCTACTTTCACTTTAATGAGCCGATCAGCTTCGACTGGAGCCACAAGCTATCAAATTACACTTTTACCGACACTGAATTCTACCCTTCCACCCATCCTCAATGCCTTTGAGATTTATATAGTCAAAGATTTCTCACAACCAGAAACTCAACAAGATGATAGGCAAATAGCATCTTCCATCTCTAAGCTCACTATGTTACAGTACTTGGATTTGTCAAATAATAGTTTAAGCGGTCCCATACCTGATTTTTTGACACACATGCAGTCACTAAAAGTCTTAAACTTGGGGAAGAACAACCTTACAGGTGTAGTTCCGAGTGGACTCCTTAATAAATCCAAAACAGGTTCACTTACATTGAGCATTGAGCAAAATCCAAATCTATGTGAATCTACTTCATGCAACCAACAGACGGATGATCAGAAGAAGAAAAAGAATATAGTTATTCCCGTAGTGTCATCAGTTGCTGGGATTGTGGTGCTCCTGGCAATTGTTGCAGCAGCTATAATCTGTGGCCTTAAGAAAAGAAAACCACGAGCAAATGTGAACAGCCATGTGGAGCCCAACACTCCAAATGTGTCACAATTGGAATCCAAGCAAAGACAATATACATTCAATGAACTTACTAAGATCACCAACAACTTTGATACAATTCTTGGTAGAGGTGGTTTCGCCATCATCAGTACGAGGATATCAGCAATTTCTAGCAGAGTGGCCATTGATCAATTGCAGGTTAAACTTCTTATGAGAGTTCATCACAAAAATCTGACTTCTCTTATTGGGTATTGCAATGAAGAAGCTAATATTGGGCTCATCTACGAATATATGGCAAATGGAAACCTAGATGGACATCTTTCAGGAAAAAATAGGAGGGCAAAGTTCTTCACTTGGGAAGACAGACTCCGAATAGCAGTGGATGCGGCCCAAGGAGTGGAATATCTGCATAATGGTTGTAAGCCACCAATAATCCACAGAGATGTGAAAACTACAAATATTTTATTAAATGAAAACTTCCAAGCAAAACTGGCTGATTTTGGGCTATCCAAAACCTTTCCCACTGATGGAGGCACGCATTTGTCCATTGTTGTTGCTGGAACTCCTGGTTACCTTGATCCTGACTCTATGCTTTCAAATGGAGATGTTAAAAATATTGTTGACTCAAGATTACATGAAGACTTTGAGACTAGCTCTGTCTGGAAAGCTGTTGAAATAGGAATGGCTTCTGTGTCCATCAATCCTGCCAGAAGGCCAAACATGAGTGATGTTGTGAACGAGTTAAAGGAGTGTTTGGCTATAGAGTTGGCCCGAAAAGGTGTGGTCGTGACACTGAAGACAATGATTCAGTTGAGTTGGTATCCTTAA 2043 0.4019 MMRMLHFLLVFLPIVVLVQAQNPSGFISIDCGLPENSSYTEQTTGINYISDAKFIDTGVSQSISPTRQQQLAYVRSFPSGVRNCYRINVASGTKYLIRATFYYGNYDGVNQAQSKGIPFISAIELRILNNNTYNTNTTGLSLALLERYDIGSITNSEYRYSDDVYDRVWTPLTFKQWKKLSTTLNPDDLVQSNYRPPAVVMSTAATPVNASALFISLGLQIVLLTNSTSTFTLMSRSASTGATSYQITLLPTLNSTLPPILNAFEIYIVKDFSQPETQQDDRQIASSISKLTMLQYLDLSNNSLSGPIPDFLTHMQSLKVLNLGKNNLTGVVPSGLLNKSKTGSLTLSIEQNPNLCESTSCNQQTDDQKKKKNIVIPVVSSVAGIVVLLAIVAAAIICGLKKRKPRANVNSHVEPNTPNVSQLESKQRQYTFNELTKITNNFDTILGRGGFAIISTRISAISSRVAIDQLQVKLLMRVHHKNLTSLIGYCNEEANIGLIYEYMANGNLDGHLSGKNRRAKFFTWEDRLRIAVDAAQGVEYLHNGCKPPIIHRDVKTTNILLNENFQAKLADFGLSKTFPTDGGTHLSIVVAGTPGYLDPDSMLSNGDVKNIVDSRLHEDFETSSVWKAVEIGMASVSINPARRPNMSDVVNELKECLAIELARKGVVVTLKTMIQLSWYP 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi122g00016 680 Pfam Protein tyrosine and serine/threonine kinase 471 578 IPR001245 GO:0004672|GO:0006468
Sebi122g00016 680 Pfam Leucine rich repeat 294 340 IPR001611 GO:0005515
Sebi122g00016 680 SUPERFAMILY Protein kinase-like (PK-like) 419 653 IPR011009 -
Sebi122g00016 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672|GO:0006468
Sebi122g00016 680 ProSiteProfiles Protein kinase domain profile. 440 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi122g00016 680 PANTHER OS07G0107800 PROTEIN-RELATED 27 109 - -
Sebi122g00016 680 Gene3D Ribonuclease Inhibitor 253 373 IPR032675 -
Sebi122g00016 680 Gene3D Phosphorylase Kinase; domain 1 421 502 - -
Sebi122g00016 680 Gene3D Transferase(Phosphotransferase) domain 1 603 666 - -
Sebi122g00016 680 SUPERFAMILY L domain-like 285 347 - -
Sebi122g00016 680 Pfam Malectin-like domain 29 112 IPR024788 -
Sebi122g00016 680 Pfam Malectin-like domain 114 215 IPR024788 -
Sebi122g00016 680 SMART serkin_6 440 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi122g00016 680 Gene3D Transferase(Phosphotransferase) domain 1 503 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi122g00016 Sebi-Chr122 183733 187424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi122g00016 7 663 Receptor kinase-like Gene Family AT1G51800 37.110 2.27e-165 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi122g00016 PK_Tyr_Ser-Thr 7.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi122g00016 - - gmx:100779474 783.097