Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1225g00006 ATGGATCGTCAATTGCTCCCGGATTTTGCGGTGAAGTCTGTCACTGTCACAGAGCATCAGCTGTATGCTATGATGGACTATATATCAGAGCTTGAATCCTGTGACCCAACCTTTGCTTTTGACGGTGTATTGAAAATGACATTGCCCGCATCTCTGAGGGGTAGTGGTTCGTCGCTCGATGATTTTCTCAACATTGATGAATCAAGGCTTATCCCACTTAAGCAAATTCCAATTTCATTTAGTCACTGTCCTGGTGTCTATGGGGTGAGGTCTTTTGCCCCAGATGATGCCTGCTTTGGACTTCTTGGTTGCTGCAGCCCATGCACAAAGTCTGATGCCTTGAAGTTTTTGAAGGACGTTACAAATAAGGACAATTATGAAGCTTCGACTTGTTGCACTCGTGCTCTTCATATCGGTGAGGAGACCTTGATGTCTCATTTCTTCTCCAGTATTCTTCCTGGGCTTGCATTGGTGACACCGACATCTTTGCTCCCCTTACCTGAGTTAAGGAGGCAAGGGCAGAAGGATTTTGCTTGTATGAATGAATTTTTTCGAGGTTTTAGATGTCTCTCTCTACATCAGAAGAGACTTGTTGTTGAAAGCTTTCTGGAAAATGATAACAGGCCTGATGCCCGCCTTTGTTCCTGTCCTGGGTGTATGTCAAGTTCTGTACAGGCAGGTGACATTGAATCCCTTCCCCAGGGGTTATTGTATGGCCCTGGGATTCAGTTAACATGCAGGGATAGGATCAGAATGACTGCCAATTTTGGTCTTTATTGTGTGGCTGCAACATCTATTTTACGACTATTGCCAGTGAAACATTCTGGGATTTCAACGCCTCTTCTTTATTATGGCACCACGCACTCAATGTTCCAGGCGCACATTGAGACTTTTTCCTTATATTCTTGGAACTATTTGCATTTTGGTTCTCCGAAAGTATGGATTGTTATCCCTCCCTGTTCAGTGCGCAGTTTTCATCGAGCTTTGTCACTTGCTATTCCGGATTTGAATCATTCTGCTTGTCAAAATTTCCTGGGGCACCGATACTTTTTTGTTGTGAGGGAGTGGCTGTTTCAACATGGCATTCCTTTTAAAGTGGTTATACAGAGGCAGGGTGAAAGTGTCATCGTTGCACCTAATGCTGTCCACTTTGGTTTCAACACAGGTTTTAATATTGCTGAGTCTGTGAACTTCGCAACAAAGGGTTGGATCCCTATGGGGATAGTAGCGCCTAGTTGCAGTGGTGGTGAGGTTCATCTGGATTTGCGTCGCATTGTTGCTGCTTTTCGAGATGATCTCCTAGGTGTTTTTGATAAACGTTTAATTCCAAAGGGTGAACACCCATCATTTTACCAGAAGATTCTTGTTGATGTGTCGTCCGGGTTGTCTGCAGGTAGTCTTTTACAGGTTGCTTCTTTTGGTGGCAGCAATGATTCTGACGGTTCTTCTTCCAGTTTGGACATGGGTGATGTTAGCCCCCCTTTTGTGCCCAAGCGTGATAAAGGACGGAGGATATTGTTGTGCCCCAAACCATCGTGTATGAAAGAGTATAGGCATGGCAAGAAGCAATATTTATTGAATCATGTAAGTAAAGAGCATCGTAACGATCCAAATTTTAAGCAGTACAAGAAAAGATTGGAAGAGATGTTTCCTCCCCGCTGCAAGACTGAACGCAAGCCATGTTCGAAATGTGGTAAACTTATTGCTGGTCGTGCCACTCAGATGAAGATCCACCAAGAAGGTTCCAATTGTGAACCGAGGTCTAGGGCAGATGGTTCATCTTCTTTCTATTAG 1794 0.4415 MDRQLLPDFAVKSVTVTEHQLYAMMDYISELESCDPTFAFDGVLKMTLPASLRGSGSSLDDFLNIDESRLIPLKQIPISFSHCPGVYGVRSFAPDDACFGLLGCCSPCTKSDALKFLKDVTNKDNYEASTCCTRALHIGEETLMSHFFSSILPGLALVTPTSLLPLPELRRQGQKDFACMNEFFRGFRCLSLHQKRLVVESFLENDNRPDARLCSCPGCMSSSVQAGDIESLPQGLLYGPGIQLTCRDRIRMTANFGLYCVAATSILRLLPVKHSGISTPLLYYGTTHSMFQAHIETFSLYSWNYLHFGSPKVWIVIPPCSVRSFHRALSLAIPDLNHSACQNFLGHRYFFVVREWLFQHGIPFKVVIQRQGESVIVAPNAVHFGFNTGFNIAESVNFATKGWIPMGIVAPSCSGGEVHLDLRRIVAAFRDDLLGVFDKRLIPKGEHPSFYQKILVDVSSGLSAGSLLQVASFGGSNDSDGSSSSLDMGDVSPPFVPKRDKGRRILLCPKPSCMKEYRHGKKQYLLNHVSKEHRNDPNFKQYKKRLEEMFPPRCKTERKPCSKCGKLIAGRATQMKIHQEGSNCEPRSRADGSSSFY 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1225g00006 597 SUPERFAMILY Clavaminate synthase-like 263 409 - -
Sebi1225g00006 597 MobiDBLite consensus disorder prediction 578 597 - -
Sebi1225g00006 597 SMART cupin_9 242 415 IPR003347 -
Sebi1225g00006 597 Gene3D Cupin 229 440 - -
Sebi1225g00006 597 PANTHER LYSINE-SPECIFIC DEMETHYLASE 264 414 - -
Sebi1225g00006 597 Pfam JmjC domain, hydroxylase 282 398 IPR003347 -
Sebi1225g00006 597 ProSiteProfiles JmjC domain profile. 221 415 IPR003347 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1225g00006 238 407 JUMONJI Transcription Factor Family AT4G20400 36.047 3.02e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi1225g00006 JmjC 2.7e-27 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1225g00006 K06709 - foc:127751391 237.269