Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1224g00002 ATGACGCGACGCTGGCTCTCGCTGGCTCTGGCCAGAAATAAGAACACTCTCTCTCTCTCTCGCCAGCAGCAGGCCAGCAGGTCGCATAGCAAGAGTGAAAGCCAGTGGAAAGGGACGCTGGACCGAATCGGCGTTGAATCAAGTGTGGTCGAATCCGATGACACAATGAAGTTTATTTTCGATGAAAATGGTTATGAAACAGTTTTAGCCCGGAAAGAGGATTTAAAATGTTTCCCGAAACTGATCCAAAGCTTGAGGGGAAGGAATTGCGGTGCAAGTACCGGTATCGTGAAGGTACGGATCCACGAGGATGACAGGAACGATGAGCAATGTCTTCAAGTTCTCCTTAAACAATTAAGGCAAATGTTTTCGGCTACTCGGCTAGTTGAGACAACGGAATGTGACAGAAGGAGAACCAAAACAGTGTTTGCTTACAATCCAGTTGAGCAGTCGACTTTAAAGGCAGCTGCCGATGAACAAATTTACCAGTTGGAGGCGAAGATCCCATCAACATCTGAGAGAGAAAAATTTATTGCCCTGGCTGCAAATCCGTTGTCTTACCAAAACAACACCAACTGCTGTACCAATGCTTTGATGGGAGGTCTTGCTTCATCCACTGACCATTTCTTTGAAATTTTGAGCAACAGTTCTCCCTACACCCCTGAACTCAAATCGGAGGTGAAGACCGATGATACTGGACATTCAAAAGGCAGAAATCCTATCATGTACGGGTCTGGTATTCGTTGTCAAAAACAATCAAGAATTTTGATTGGAGGAATCCTAGACATGTGCCAACTTGGAACAATCTTGGATCAGGCTGAAGAGAAATTTGATGGTATCACGTCACCTTACATCTATGCTGCGACTTCCCATAGTTTCTTCCCATGGCATATTGAGGACATGGCACTGAATGCAATCTCTCCCAAGTATTTTGGCCTGGTCGACCATCTTGTTCAAGGATTTAGGATGGACCTTAGACACACCATGTGTCGTGCTGTTCTTGTGGACCACAAATCTGTTCTTTTCCACCCCACTTTCACTCAAAAAACTATGGGTATTCCTTATGTGACTTTGCAACAAGACCCAGGAGATTTAATTATTGTGTGGCCTTACACACTCCACTCTGGTTTCAGCACTGGTAACAGCTTAGCCATGTCTGTTAACTTTGCTGATGAAGAGTGGGCGGAACAAGCAATTTATGCACCAGTTTGTGGTTGTAGGCTGTATGTCGCAAGAGCAGTGATAGGAAAGTGA 1254 0.4506 MTRRWLSLALARNKNTLSLSRQQQASRSHSKSESQWKGTLDRIGVESSVVESDDTMKFIFDENGYETVLARKEDLKCFPKLIQSLRGRNCGASTGIVKVRIHEDDRNDEQCLQVLLKQLRQMFSATRLVETTECDRRRTKTVFAYNPVEQSTLKAAADEQIYQLEAKIPSTSEREKFIALAANPLSYQNNTNCCTNALMGGLASSTDHFFEILSNSSPYTPELKSEVKTDDTGHSKGRNPIMYGSGIRCQKQSRILIGGILDMCQLGTILDQAEEKFDGITSPYIYAATSHSFFPWHIEDMALNAISPKYFGLVDHLVQGFRMDLRHTMCRAVLVDHKSVLFHPTFTQKTMGIPYVTLQQDPGDLIIVWPYTLHSGFSTGNSLAMSVNFADEEWAEQAIYAPVCGCRLYVARAVIGK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1224g00002 417 PANTHER LYSINE-SPECIFIC DEMETHYLASE 269 404 - -
Sebi1224g00002 417 SUPERFAMILY Clavaminate synthase-like 260 399 - -
Sebi1224g00002 417 Gene3D Cupin 66 415 - -
Sebi1224g00002 417 Pfam JmjC domain, hydroxylase 284 389 IPR003347 -
Sebi1224g00002 417 SMART cupin_9 247 406 IPR003347 -
Sebi1224g00002 417 ProSiteProfiles JmjC domain profile. 250 406 IPR003347 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1224g00002 267 394 JUMONJI Transcription Factor Family AT2G34880 27.660 3.13e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi1224g00002 JmjC 1.9e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1224g00002 - K06709 foc:127752080 100.138