Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1217g00002 ATGTCACCAAATGCATCACCATTGTCAATCATGAAACAAAAGCTCTCATTTTCAACCCCATTCCTTGGCATCCCATTATGGGTTTTGCTACTAGCTTCCACAGCAGCATTCATTGTTGCAGCATGTGTCATCATGTGTGTTTGCTTCATCTACTATCATCGTCAAAAATCCTACAAGCCCAGTTTTTCATTACCCAAATCAATAGCATGCAAGCACTACCGTGGTGTTTTTGGTTCTTCCTCCCTTGACAGGGGGTTACTATCAGCACCAAGCAATGTCTCAGAATTTGAGATTAACTTTGACAAGTTATCAGTATCAGGTCATCATGAGTTGTTCCAACCTGGCCAGTTTTATCCAAAGGTTAATATCATTAAAAAAGATGAATTTTTTAAAGGTTTTGAGTCAAGTGGTAAGCTCTCTCCTGTTGCCAAGGATGTGAAGAGGGAGTTTTATTTTAGCCTTAAGGAGATAGAGGATGCTACAAATGGATTGGCTCAAGAAAATGTCATTGGAAGTGGGGATAATGGGATTGTTTATCTTGGTTTGTTGCCAAATAATAGGAGGGTGGCAGTGAAGAAACTAGTTTGTGACAGGATGTCAGTAACTGAATATGTAGATAATGGAAATCTGCATTATTGGCTTCATGAGTTTCCTGGACTAGTCAGTCCTCTAACATGGACTATAAGATTAAGCATAATCCATGGTGTGGCAAAAGGACTGGCATATCTTCATGAGGAAGTAGAACCAAAGATTCTCCATGGCAACATAAAATCCAACAATATATTGCTTGACCATCAATGGAATGCAAAGATATCTGACTTTGGTCTTGTTAAGCTTCTCAGTCCTGAATGGAGTCACATTATAATGGAAACATTGGGATTATATCAGGGAGGATGGCTTTTAAATCACAGTCAACCCCAGGCTCATATAGTAGACTGGTTCAAATCAATGATTTCCAATGGAAAGATTTCTTATGTGGTGGATCCAAAATTGCCTGAAATTCCTCCTTCAAAGGAACTTAAACGATTTATTTTGGTTGCTCTAAGATGTGTGGATCCTGATGTGAATCCTAGAATTAAAATGGGAGATGTGGTTCACATGCTTGAGTCCAACTTACTTCTTTTTGATGAACACCAAATTGCCATGGAGCCTTGTGAACACAATCACTCTCCACAAGTCAGCACTCAGCATGATTAG 1197 0.3918 MSPNASPLSIMKQKLSFSTPFLGIPLWVLLLASTAAFIVAACVIMCVCFIYYHRQKSYKPSFSLPKSIACKHYRGVFGSSSLDRGLLSAPSNVSEFEINFDKLSVSGHHELFQPGQFYPKVNIIKKDEFFKGFESSGKLSPVAKDVKREFYFSLKEIEDATNGLAQENVIGSGDNGIVYLGLLPNNRRVAVKKLVCDRMSVTEYVDNGNLHYWLHEFPGLVSPLTWTIRLSIIHGVAKGLAYLHEEVEPKILHGNIKSNNILLDHQWNAKISDFGLVKLLSPEWSHIIMETLGLYQGGWLLNHSQPQAHIVDWFKSMISNGKISYVVDPKLPEIPPSKELKRFILVALRCVDPDVNPRIKMGDVVHMLESNLLLFDEHQIAMEPCEHNHSPQVSTQHD 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1217g00002 398 Gene3D Transferase(Phosphotransferase) domain 1 295 380 - -
Sebi1217g00002 398 PANTHER OS01G0323000 PROTEIN 305 381 - -
Sebi1217g00002 398 Gene3D Phosphorylase Kinase; domain 1 130 208 - -
Sebi1217g00002 398 SUPERFAMILY Protein kinase-like (PK-like) 149 383 IPR011009 -
Sebi1217g00002 398 Gene3D Transferase(Phosphotransferase) domain 1 209 294 - -
Sebi1217g00002 398 ProSitePatterns Protein kinases ATP-binding region signature. 170 193 IPR017441 GO:0005524
Sebi1217g00002 398 ProSiteProfiles Protein kinase domain profile. 118 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1217g00002 398 Pfam Protein kinase domain 201 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1217g00002 Sebi-Chr1217 16039 18515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1217g00002 152 371 Receptor kinase-like Gene Family AT2G48010 30.717 2.80e-33 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi1217g00002 Pkinase 1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1217g00002 - - vra:106762086 449.129