Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1213g00001 ATGGAAAGCAAGTTCCAGAACTCAGTTTTGCTCGAATTAGCAGCATGCAATGATTTTGAGGCTTTCAAAAAGGAAGTAGAAGAGAAAGGTTTTGATGTCAATGAGGCAGGATTTTGGTATAGTAGAAGAATTGCATCAAATAAGATGGGATATGAAAAGAGGACATCCCTCATGGTTGCTTCTTTGTTTGGAAGCACTAATGTGATGAAGTATATTATTGAGACTGGCAGGGTTGATGTGAACATGGCCGTTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTTGCTGGGGGCTCTGAATCCAACCTTGAGATTGTCAAACTCTTGCTTGATGCTGGGGCAAATTCTGAGTGCCTTGATGCGAGTGGTAATAAACCTGTTAATCTGATTGCTCCTGCCTTTAATACTTTGTCCAAATCACGAAGGAAGGCTATGGAGTTGTTGCTCAGAGGTGGGGAGGGAGATCAAATGATCAACCTAGAGATGGAGGAGCAGAAATTTTCAATGCCTTCTTTACCATCAAAAGAAGGAACTGAGAAGAAAGAATATCCTATTGATATATCATTGCCTGACATAAACAATGGTGTTTATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCTTACACCCACGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAACGCGAGGAGGAGAGACCCACGGAAGTACCCTTACAGCTGTGTTCCCTGCCCTGAGTTTCGCAAAGGGACCTGCCAGAAGAAAGATGCCTGTGAATATGCACATGGTGTTTTTGAGTCCTGGCTACATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGATTAGCTGTTCTAGGAAAGTTTGCTTCTTTGCTCACAAGCCTGAAGAGTTACGCCCTGTGTATGTTTCCACTGGATCAGCATTGCCTTCACCAAAATCTTCTTCAGCTAGTGCACTTGATACAAAAGTGATGTGTCCTTTGTCTCTTAGTTCCTCATCTTTGCCAATGTCAACCGTTTCAAGTTCAACACCACTCATGTCTCCCTTGGCAGCTGTTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAATAAAATCAACCTCACTCCACCTTCATTGCAGCTCCCAGGTAGCCAGCTGAAAACTGCTTTCAGTGCAAGGGATTTTGATCTTGAAATGGAACTGCTTGGTCTTGAAAGACCTTCTAATCAACAGCAGCAACAATTGATAGAAGAGATTGCCCGACTCTCTTCCCCGTCTTTCCAGAACAAGGAATTCAATAGGATTGGTGATTTGAAGCCAACTAACCTTGATGACTTGTTAGGATCTGTTGATACTTCTGTACTATCTCAATTACATGGTCTATCAATGCAGCCTTCAACACCTACACAATTGCAATCTCCAAGTAGGCTTCAGCTGCACCAAAACATGAACCATCTTCGGGCAAGTTATCCATCCAACATTGCCTCCACTCCTGTGAGAAAATCCTCAGCATTTGGGTTTGATTCATCAGCTGCTGTGGCTGCAGCTGTGATGAATTCAAGGTCTGCTGCATTTGCAAAGCGAAGCCAAAGTTTTATGGATCGTGGCGTGGCAAGACACCACCATCTTGGTGTGTCTTCTTCAGCTTCCAACCCCACCTGTAGGATGACCTCTGGCCTTTCAGATTGGACTTCACCTGATGGGAAACTGGATTGGGGCATGAATGGACACGAGCTGAACAAATTGAAAAAATCTGCTTCTTTTGGGTTCAGAAACAATGGGGATGTTTCCTCTGAGAGTTCTGAGATGTATAGTGCTGAGAAGCTGCAACTTGGTCTCCGGAAAGAGATGCTTTCACCATGGATGGAACAGCTGTATATGGAACAAGAGCAGATGGTAACATTGCCAATTGCAGGTTCAACCACAGGGAGTTACTTGCAACTTAGAGCAGCAAATTTCCACAAAAGACCAATTGCAGGTTTGAGGGGAGAGAAGCTTCAATTTTCAAGTGTAAACTTCTGTCTGAAGCATAAAGTTTCCTGTAAAGTTACTGAGTTAGGAAGTGATTCATGCTCATCAAAGGAACTTGAAAAGAGTAAACCTTTGGTTAAGATGTGTGGCATTACATCAGCTAAAGATGCTGCTATGGCAGCTGAAGCTGGTGCAAACTTTATTGGAATGATCATGTGGCCAAACTCGAAACGTTCTGTTTCACTCTCTGTTGCAAAGGAGATATCAAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGAGTATTTGTGGATGATGATGTAGAAACAATATTAAGAGCTTCTGATGCATCAAATCTTGAGTTTGTGCAGCTTCATGGATCTGGTTCTCGGGCAGCTTTTCCATCTTTAATTCAGGAAAACCGTGTAATATACGTTCTCCATGCAAATGGGGATGGGAGCCTTTTAAACACAATTTCTGATGAAGAATGCTCTCTGGTTGATTGGATTCTTGTAGATAGTGCAAAGGGTGGCAGTGGCACAGCATTCAATTGGTCCCAGTTTAAACTACCAAAAATTAGAAGCAAGTATGGTTGGCTCTTGGCAGGAGGGATCAATCCTGAAAATGTTTCTGAGGCTCTATCTATTCTCAAACCTGAAGGGGTGGATGTCAGTAGTGGCATATGTGCATCAGATGGCATCCAGAAGGATCAATCAAGAATAGCTTCCTTCATGGATGCAGTGCGTTCTGTTCAGTATTGA 2730 0.4363 MESKFQNSVLLELAACNDFEAFKKEVEEKGFDVNEAGFWYSRRIASNKMGYEKRTSLMVASLFGSTNVMKYIIETGRVDVNMAVGSDRATALHCAVAGGSESNLEIVKLLLDAGANSECLDASGNKPVNLIAPAFNTLSKSRRKAMELLLRGGEGDQMINLEMEEQKFSMPSLPSKEGTEKKEYPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYAHGVFESWLHPAQYRTRLCKDEISCSRKVCFFAHKPEELRPVYVSTGSALPSPKSSSASALDTKVMCPLSLSSSSLPMSTVSSSTPLMSPLAAVSSPKSGSLWQNKINLTPPSLQLPGSQLKTAFSARDFDLEMELLGLERPSNQQQQQLIEEIARLSSPSFQNKEFNRIGDLKPTNLDDLLGSVDTSVLSQLHGLSMQPSTPTQLQSPSRLQLHQNMNHLRASYPSNIASTPVRKSSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFMDRGVARHHHLGVSSSASNPTCRMTSGLSDWTSPDGKLDWGMNGHELNKLKKSASFGFRNNGDVSSESSEMYSAEKLQLGLRKEMLSPWMEQLYMEQEQMVTLPIAGSTTGSYLQLRAANFHKRPIAGLRGEKLQFSSVNFCLKHKVSCKVTELGSDSCSSKELEKSKPLVKMCGITSAKDAAMAAEAGANFIGMIMWPNSKRSVSLSVAKEISKVARDYGAEPVGVFVDDDVETILRASDASNLEFVQLHGSGSRAAFPSLIQENRVIYVLHANGDGSLLNTISDEECSLVDWILVDSAKGGSGTAFNWSQFKLPKIRSKYGWLLAGGINPENVSEALSILKPEGVDVSSGICASDGIQKDQSRIASFMDAVRSVQY 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1213g00001 909 CDD PRAI 702 904 IPR001240 GO:0004640|GO:0006568
Sebi1213g00001 909 Gene3D Aldolase class I 698 908 IPR013785 -
Sebi1213g00001 909 SMART ANK_2a 87 119 IPR002110 GO:0005515
Sebi1213g00001 909 SMART ANK_2a 52 82 IPR002110 GO:0005515
Sebi1213g00001 909 PANTHER N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE 642 909 IPR044643 GO:0000162|GO:0004640
Sebi1213g00001 909 SUPERFAMILY Ribulose-phoshate binding barrel 701 906 IPR011060 -
Sebi1213g00001 909 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Sebi1213g00001 909 FunFam Tryptophan biosynthesis protein TRP1 700 906 - -
Sebi1213g00001 909 SUPERFAMILY Ankyrin repeat 7 133 IPR036770 -
Sebi1213g00001 909 Pfam N-(5'phosphoribosyl)anthranilate (PRA) isomerase 702 902 IPR001240 GO:0004640|GO:0006568
Sebi1213g00001 909 ProSiteProfiles Zinc finger C3H1-type profile. 242 269 IPR000571 GO:0046872
Sebi1213g00001 909 ProSiteProfiles Ankyrin repeat region circular profile. 87 116 - -
Sebi1213g00001 909 SMART c3hfinal6 277 300 IPR000571 GO:0046872
Sebi1213g00001 909 SMART c3hfinal6 242 268 IPR000571 GO:0046872
Sebi1213g00001 909 Pfam Ankyrin repeats (3 copies) 13 116 IPR002110 GO:0005515
Sebi1213g00001 909 Gene3D - 243 305 - -
Sebi1213g00001 909 Hamap N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 700 907 IPR001240 GO:0004640|GO:0006568
Sebi1213g00001 909 Gene3D - 1 172 IPR036770 -
Sebi1213g00001 909 FunFam Zinc finger CCCH domain-containing protein 66 200 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1213g00001 Sebi-Chr1213 389 5700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1213g00001 8 628 C2H2 Transcription Factor Family AT5G12850 39.074 1.13e-130 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi1213g00001 PRAI 3.8e-39 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1213g00001 - - gmx:100783376 905.975